Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq248150 149 1e-33 seq252576 140 6e-31 seq89940 132 9e-29 seq54008 107 4e-21 seq178641 91.5 3e-16 seq200409 89.7 9e-16 seq57114 86.0 1e-14 seq173435 77.0 6e-12 >seq248150 Length=2497 Score = 149 bits (164), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||||||||||||||||||| | | |||||||||| ||||| ||| ||||||| Sbjct 630 AGCGCACATGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGACAGCCTGCGATA 689 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| | | || | || ||||||| ||||||| |||||||||||||| | Sbjct 690 AGCTTCGGGGAG-GCGGCAATATCCTGTGATCCGGAGATTTCTGAATGGGGAAACCCACC 748 Query 121 --CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAA 178 | | | | | || || | | |||| ||||||||| || ||| |||| Sbjct 749 TAGCATAAG--CTAGGTATCCTAATTTATTAGG------AAGCGAACGAGGGGAAGTGAA 800 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||||| |||| | ||||| ||| ||||| ||||||||| ||||| |||||||||| Sbjct 801 ACATCTCAGTACCCTTAGGAATAGACATCAATTGAGATTCCCCTAGTAGCGGCGAGCGAA 860 Query 239 ATGGGATGAGCC 250 |||| |||| Sbjct 861 CGGGGAGAAGCC 872 >seq252576 Length=611 Score = 140 bits (154), Expect = 6e-31 Identities = 187/254 (74%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||| |||||||||| | | |||||||||||||||| | ||||| |||| Sbjct 276 ACATGGTGAATGCCTTGGCAGTCAGAGGCGATGAAGGACGTGCAAATCTGCGAAAAGCGT 217 Query 66 CGGGGAG-TGAGC--AAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCG--GC 120 ||| || ||| || | || | | ||| ||| |||||||||||||||||| || Sbjct 216 CGGTAAGCTGATATGAAGCGCAAT---AACCGTCGATATCCGAATGGGGAAACCCGATGC 160 Query 121 CCTT---TGGGTCATTGCATGCTGAAT-ACATAGGTATGCAAAGCGAACGCGGCGAACTG 176 || || ||||| ||||| | ||| | ||||| ||| | | |||||| Sbjct 159 AATTAAATGCATCATTATTAATTGAATTAAATAAATTAATAAAGCAAACCCAGGGAACTG 100 Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| Sbjct 99 AAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAGCG 40 Query 237 AAATGGGATGAGCC 250 ||| |||| |||| Sbjct 39 AAAGGGGAGCAGCC 26 >seq89940 Length=26391 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 5793 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 5734 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 5733 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 5682 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 5681 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 5624 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 5623 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 5564 Query 249 CCT 251 ||| Sbjct 5563 CCT 5561 >seq54008 Length=427 Score = 107 bits (118), Expect = 4e-21 Identities = 132/176 (75%), Gaps = 11/176 (6%) Strand=Plus/Minus Query 85 CTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCT-------TTGGGTCATTGC-A 136 ||||||||| |||||||||||||||||||||| | | | | || || | | Sbjct 412 CTTTGATCCAGAGATTTCCGAATGGGGAAACCCAACACGAGTTATGTCGTGTTATCGATA 353 Query 137 TGCTGAATACATAGG-TATGCAAAGCGA-ACGCGGCGAACTGAAACATCTAAGTAGCTGC 194 || ||||||||||| ||| ||| | |||||| |||||||||||||| |||| | || Sbjct 352 TG-TGAATACATAGCATATCTGAAGGCAGACGCGGGGAACTGAAACATCTTAGTACCCGC 294 Query 195 AGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCC 250 ||||| ||||| || ||||||| ||||| ||||||||||| |||| ||||| Sbjct 293 AGGAAGAGAAAGAAAAATCGATTCCCTGAGTAGCGGCGAGCGAAACGGGAAGAGCC 238 >seq178641 Length=805 Score = 91.5 bits (100), Expect = 3e-16 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| |||||||| ||||||||| || ||||||| Sbjct 387 AGGGCATTTGGTGGATGCCTTGGCATGCACAGGCGAAGAAGGACGTGATACGCTGCGATA 328 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| | |||||| || || | ||||||||| ||||||||||||||| ||||| Sbjct 327 AGCCGTGGGGAG-CTGCGAATAAGCTTTGATCCATGGATTTCCGAATGGGGCAACCC 272 >seq200409 Length=263 Score = 89.7 bits (98), Expect = 9e-16 Identities = 121/168 (72%), Gaps = 17/168 (10%) Strand=Plus/Minus Query 87 TTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATAC 146 ||||||||||| | ||||||||||| ||||| || || ||| | | | ||| Sbjct 257 TTGATCCGCAGGTATCCGAATGGGGCAACCCA---CTATG-----TTGAAGACATAGTAC 206 Query 147 A----TAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAG 202 | ||||| ||||| | || |||||||||||||||||||| | |||| ||| Sbjct 205 ACCGATAGGTGGGCAAACC-----CGCTGAACTGAAACATCTAAGTAGGCGGAGGAGAAG 151 Query 203 AAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCC 250 ||| ||| | |||||| ||||||||||||||||| |||| |||| Sbjct 150 AAAACAAAAGTGATTCCGTAAGTAGTGGCGAGCGAACGCGGATTAGCC 103 >seq57114 Length=25345 Score = 86.0 bits (94), Expect = 1e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| |||||| |||||||||||||| || ||||| Sbjct 1931 GCGAACTGAAACATCTAAGTAGCTAAAGGAAAGGAAATCAACCGAGACCCCGTTAGTAGC 1990 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 1991 GGCGAGCGAGAGCGGAT 2007 >seq173435 Length=448 Score = 77.0 bits (84), Expect = 6e-12 Identities = 152/217 (70%), Gaps = 16/217 (7%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGAT 59 || || || ||||||||||||||| | || | | ||||||||| | || | |||| Sbjct 223 AGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCTACGAAGGACGTTACTAACGA-CGAT 281 Query 60 AAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 | ||| |||||| | || | | ||||||| |||||||||||||||||||||| Sbjct 282 ATGCTTTGGGGAGCT-GTAAGTAAGCGTTGATCCAGAGATTTCCGAATGGGGAAACCCAA 340 Query 120 CCC--TTTGGGTCAT------TGCATGCTGAATACATAGGTATG---CAAAGCGAACGCG 168 | | || ||||| |||| ||||| |||| | ||| || || || || Sbjct 341 CACGAGTTATGTCATGTTATCGACATG-TGAATTCATA-GCATGTCAGAAGGCAGACCCG 398 Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAA 205 | |||||||||||||| |||| | | ||||| ||||| Sbjct 399 GAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAA 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915945778048