Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq240622 325 1e-86 seq89940 197 5e-48 seq259943 194 6e-47 seq57114 187 8e-45 seq172348 185 3e-44 seq169652 163 1e-37 seq210360 131 6e-28 seq6701 89.7 2e-15 >seq240622 Length=271 Score = 325 bits (360), Expect = 1e-86 Identities = 236/272 (87%), Gaps = 1/272 (0%) Strand=Plus/Plus Query 74 GAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCAC 133 ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 1 GAACCTTTGGGCGCCTCCGTTACTCTTTAGGAGG-CAACCGCCCCAGTTAAACTACCCAT 59 Query 134 CAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTG 193 ||||||||||||| | || ||| | || || |||||||||||||| ||| ||||||| Sbjct 60 CAGGCACTGTCCCTGAACCGGATTACGGACCGAGGTTAGATATCCAGAACGACCAGAGTG 119 Query 194 GTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCC 253 |||||||||| |||||||| | |||| ||||| ||| ||| |||||||||||||||| Sbjct 120 GTATTTCAACGTTGACTCCACGAACACTGGCGTGATCGCTTCACAGTCTCCCACCTATCC 179 Query 254 TACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCGGGGTCTTTTCGT 313 ||||||| ||| |||||| |||||||||| ||||||| ||||||||||||||||| ||| Sbjct 180 TACACAAGCCGAACCGAACACCAATACCAAACTATAGTAAAGGTCCCGGGGTCTTTCCGT 239 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTA 345 ||||| ||||| |||||||||||||||||||| Sbjct 240 CCTGCTGCGCGTAACGAGCATCTTTACTCGTA 271 >seq89940 Length=26391 Score = 197 bits (218), Expect = 5e-48 Identities = 393/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 3431 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 3490 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 3491 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 3549 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 3550 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 3609 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 3610 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 3666 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 3667 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAAGCCC--AAAGCCAATCCCAGGGAACAGTG 3724 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 3725 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 3784 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 3785 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 3843 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 3844 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 3903 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 3904 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 3957 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 3958 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 3987 >seq259943 Length=334 Score = 194 bits (214), Expect = 6e-47 Identities = 204/263 (78%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||||||||||||||| ||| ||| || |||| ||| ||||||| || Sbjct 63 TCGACTTGTCAGTCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATTTCC 122 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||||| | || |||||| | || |||||||||| ||||||| || |||||||||| Sbjct 123 GACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTGGGA-GGAGACCGCCCCAG 181 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAG-ATATCCA 179 | ||||||||||||| ||||||||| |||| ||| | ||||| ||||||| ||| | | Sbjct 182 TCAAACTACCCACCATACACTGTCCCTGACCCGGATAACGGGCCGAGGTTAGAATACCGA 241 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCA---TCA 236 | || |||||||||||| | | |||||| | ||| || ||| || ||| Sbjct 242 AT-TTTAAAGGGTGGTATTTCAAGGATGGCTCCACCAAAACTGGC---GCCCCAATTTCA 297 Query 237 TAGTCTCCCACCTATCCTACACA 259 ||| ||||||||||||||||||| Sbjct 298 TAGCCTCCCACCTATCCTACACA 320 >seq57114 Length=25345 Score = 187 bits (206), Expect = 8e-45 Identities = 236/325 (73%), Gaps = 17/325 (5%) Strand=Plus/Minus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||||||||| | Sbjct 4196 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 4137 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||| | Sbjct 4136 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 4077 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 4076 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 4017 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 4016 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 3957 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| || | | | ||| | |||| || || ||||||||||| Sbjct 3956 CATTCAAAGCTT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCG 3913 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| ||||| | ||||| ||| Sbjct 3912 GGCAGGTGTCAGACTCTATACATCG 3888 >seq172348 Length=362 Score = 185 bits (204), Expect = 3e-44 Identities = 127/143 (89%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 422 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAA 481 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAAA 60 Query 482 TTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGG 541 || |||| |||| | | | ||| | ||||||||||||||||||||||||||||| Sbjct 61 TTCTCCGCTTCACCCCCTAAAGGGT----TAACGAGTCCTCTTAACCTTCCAGCACCGGG 116 Query 542 CAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||||||||| ||| Sbjct 117 CAGGCGTCAGTCCGTATACATCG 139 >seq169652 Length=299 Score = 163 bits (180), Expect = 1e-37 Identities = 193/260 (74%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||||||||||||||||||||| |||| ||| |||||||| ||||| || Sbjct 261 TCGACTTGTAAGTCTCGCAGTCAAGCTTCCTTATGCCTTTACACTCTATGAATGATTTCC 202 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| |||||| |||||||| ||||||||||||| ||| ||| ||| |||||||||| Sbjct 201 AACCATTCTGAGGAAACCTTTGAGCGCCTCCGTTACTCTTTAGGA-GGCGACCGCCCCAG 143 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||| | | ||||||| || ||| ||| | || ||||||| ||||| Sbjct 142 TCAAACTGTCCATCTGACACTGTCTCCCACCATGATAAATGGTGCGGGTTAGAAATCCAA 83 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || | || || |||| || ||||| ||| || || ||| || ||| || Sbjct 82 CACAGCAAGGGTAGTATCCCACCAACGCCTCGACGTAAGCTGGCGCTCACGTTTCAAAGG 23 Query 241 CTCCCACCTATCCTACACAA 260 |||| ||||||||| |||| Sbjct 22 CTCCTACCTATCCTGTACAA 3 >seq210360 Length=261 Score = 131 bits (144), Expect = 6e-28 Identities = 83/90 (92%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 90 TCGACACGTCCGTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGACACCTGATTGCC 31 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTC 90 |||||||||||||||||||||||||||||| Sbjct 30 AACCAGGCTGAGGGAACCTTTGGGCGCCTC 1 >seq6701 Length=275 Score = 89.7 bits (98), Expect = 2e-15 Identities = 188/274 (69%), Gaps = 10/274 (4%) Strand=Plus/Minus Query 54 GATTGCCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACC 113 |||| || ||| | ||||| ||| | | ||||||||||||| ||| ||||| | ||| Sbjct 271 GATTTCCGACCGGTCTGAGCCCACCATCGCGCGCCTCCGTTACTGTTTAGGAGG-CGACC 213 Query 114 GCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGG--GCCAAGGTTA 171 |||||||| ||||||||| || | ||| |||| | | || ||| | || || | |||| Sbjct 212 GCCCCAGTCAAACTACCCGCCTGACACGGTCCTCCAGCCGGATGACGGCTGCGA--GTTA 155 Query 172 GATATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCG 231 || | | | | || | ||||| ||| |||||| | || ||| | | Sbjct 154 GAGACTCTATGCATGAAGGGCGGTATCCCAAGGGTGACTCCTCCGAAGCTGGCGCTCCGG 95 Query 232 CATCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGC--CAATACCAAGCTATA 289 || ||||||| |||||||| ||| |||| || || ||||| || ||| || Sbjct 94 TCTCGACGTCTCCCGCCTATCCTGTACATCATGCAC--AAAGCCTCAATATCAGGCTGTA 37 Query 290 GTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCG 322 || ||| ||| ||||||||| ||||||| |||| Sbjct 36 GTAAAGCTCCATGGGGTCTTTCCGTCCTGTCGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1697850710528