Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq68140 255 1e-65 seq53167 107 3e-21 seq134973 77.0 5e-12 >seq68140 Length=433 Score = 255 bits (282), Expect = 1e-65 Identities = 211/252 (84%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 431 ATAATTGGTTTTTGCGGCTGTCTGACCGGGCAGTGCCGCGAAGCTACCATCTGCTGGATA 372 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146 |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| | Sbjct 371 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGCGATTTTCTCCAGCACGT 312 Query 147 CGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCC 206 |||| |||||||||||||||||||||||| ||||||||||| | ||| || | Sbjct 311 CGTACGAGGATACGAATAGGCTTCGGCCCCGGACCTTAGCAGGGC-ATAACTCCTCTCTC 253 Query 207 GCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCC 266 | |||| || | | | | || ||||| ||||||| | || || |||| ||||| Sbjct 252 GTAGAAGTCGGGAGAGGT-AATTGCCGGATAGCAATTTGA-CAGCGGCTGGGA-GAATCC 196 Query 267 TTTGCAGACGAC 278 |||||||||||| Sbjct 195 TTTGCAGACGAC 184 >seq53167 Length=7246 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 6986 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 7043 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 7044 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 7103 Query 121 GAA 123 ||| Sbjct 7104 GAA 7106 >seq134973 Length=390 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | | | | | ||||| || | ||| |||| |||| Sbjct 52 GTACGAGAGGAACCGCTGCCTC--GGACATTTGGTACATGTGCTTGTTCGACCGAACAGT 109 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| | ||||||| |||||||||||||||| ||||||| Sbjct 110 GGCACGAAGCTACCATCCGTCGGATTATAGCTGAACGCCTCTAAGCTAGAATCC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817079278592