Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq53167 625 9e-177 seq131641 421 2e-115 seq174893 401 2e-109 seq222770 233 6e-59 seq229776 181 3e-43 seq159694 178 4e-42 seq137618 95.1 4e-17 seq146892 84.2 7e-14 >seq53167 Length=7246 Score = 625 bits (692), Expect = 9e-177 Identities = 451/513 (88%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 2105 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 2046 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2045 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1986 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 1985 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 1926 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 1925 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 1866 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 1865 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 1808 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 1807 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 1748 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 1747 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 1689 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 1688 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 1629 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1628 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1596 >seq131641 Length=259 Score = 421 bits (466), Expect = 2e-115 Identities = 250/260 (96%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 218 ATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277 |||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| Sbjct 259 ATTTGAATGAACCATCGCCGGCGCAAGGCCATGCGATTCGTTAAGTTATCATGATTCACC 200 Query 278 AAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG 337 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 199 AAGGAGCCCCGAAGGGCATTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG 140 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 80 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 ||||||||||||| || ||||||||||||||||||||| || | || ||||||||||||| Sbjct 79 ATAAACGATAACTTATATAATGAGCCATTCGCAGTTTCGCTTTGTA-ATTGCTTATACTT 21 Query 458 AGACATGCATGGCTTAATCT 477 |||||||||||||||||||| Sbjct 20 AGACATGCATGGCTTAATCT 1 >seq174893 Length=9937 Score = 401 bits (444), Expect = 2e-109 Identities = 370/458 (81%), Gaps = 13/458 (3%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 ||||||||||| ||||| ||||||| |||||||||||||||||| || ||| |||||| Sbjct 2525 TTTATTGTCACAACCTCTCCGTGTCAAGATTGGGTAATTTGCGCGTTTGTTGCTTTCCTT 2466 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 ||||||||||||||||||||||||| ||||| || |||||||||||||||| || | ||| Sbjct 2465 GGATGTGGTAGCCGTTTCTCAGGCTTCCTCTTCGAAATCGAACCCTAATTCTCCATCACC 2406 Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 |||| || |||||||||||||||| |||||||| ||||||||| | || |||||| || Sbjct 2405 CGTTACCACAATGGTAGGCCACTATCTTACCATCGGAAGTTGATACGACA-AAATTTAAA 2347 Query 225 TGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAG 283 ||| | ||| | | ||||||||||||| | |||||| |||||||| || ||| Sbjct 2346 TGATGTGTAGCCAACACAAAGGCCATGCGATCTATCGAGTTATCATGAATCATCA--GAG 2289 Query 284 C-CCCGA-AG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGG 336 | | || || |||| | ||||||||||||||||||| ||||||| |||| ||| Sbjct 2288 CAACAGACAGAGTCCGCGTCGACTTTTTATCTAATAAATACATCCCTTCCAAAAGTTGGG 2229 Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396 ||| | | ||||||| ||||||||||| |||||||||| |||||| ||| |||| Sbjct 2228 ATTTGTTATACGTATTAGATCTAGAATTACTACGGTTATCCGATTAGTAA-TTACCATCA 2170 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATAC 455 || ||| |||||||||||||| || |||||||||||| || || | | ||| | |||| Sbjct 2169 AACAAAGTATAACTGATTTAATTAGTCATTCGCAGTTTTACAGTCTGAATTTGTTCATAC 2110 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 ||| |||||||||||||||| |||||||||| |||||| Sbjct 2109 TTACACATGCATGGCTTAATGTTTGAGACAAACATATG 2072 >seq222770 Length=285 Score = 233 bits (258), Expect = 6e-59 Identities = 228/289 (79%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 285 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTCTCTCAGGCTCCCTCTCCGGAACCGAAC 226 Query 148 CCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGA 207 ||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||| Sbjct 225 CCTGATTCCCCGTTACCCGTTACAACCATGGTAGGCGAATAACCTACCATCGAAAGTTGA 166 Query 208 TAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT---AAGTT 264 || ||||| | | ||| || ||||| || |||||| ||||||| | | ||||| Sbjct 165 TAAGGCAGTTACTCGAAGGATATGTCGCCAGCGCAAGGCTATGCGATCAGCTAGAAAGTT 106 Query 265 ATTATGAATCACCA--AGGAG--CCCCGAAGGGCGTTGGTTTTTTATCTAATAAATAC-- 318 ||| || |||||| || || | ||| | || | | | || |||||||||| | Sbjct 105 ATTCAGAGTCACCACCAGTAGGCACACGAGGCGCCCTTGGTCTTGGTCTAATAAATGCGT 46 Query 319 ACCCCTTCCG--AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 | |||| || ||| | ||||| |||||||||||||||||||||| Sbjct 45 CCGCCTTGCGGCAAGAC----TTTTTTGCATGTATTAGCTCTAGAATTA 1 >seq229776 Length=458 Score = 181 bits (200), Expect = 3e-43 Identities = 230/308 (75%), Gaps = 19/308 (6%) Strand=Plus/Minus Query 215 GAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTT--AAGTTATTATGA 271 || ||||||| || | |||||||| | |||||| |||||| | |||||||| || Sbjct 458 GACATTTGAAAGATGCGTCGCCGGCACGAAGGCCGTGCGATCAGCCCAAAGTTATTCAGA 399 Query 272 ATCACCAAGG-AGCC-----CCGAAGGG--CGTTGGTTTTTTATCTAATAAATACACCCC 323 ||||||| | || | ||||| || | | |||| |||||||||| | ||| Sbjct 398 GTCACCAAAGTAGACGATGGCCGAAACCACCGATTGGTTTTGATCTAATAAAAGCGTCCC 339 Query 324 TTCCGAA----GTCGGGGTTTT--TAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 ||||| |||||| | | | |||||||||||||| || ||| || | ||||||| Sbjct 338 TTCCGTCTCCGGTCGGGACTCTGTTGGCATGTATTAGCTCCAGTATTTCCGCAGTTATCC 279 Query 378 ATGTAG-TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 ||||| | | |||| ||| | | ||| ||||||||| ||||||||| | ||| |||||| Sbjct 278 ATGTAACTGAAGTACGATCTATTGAACCATAACTGATATAATGAGCCTTCCGCGGTTTCA 219 Query 437 CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 496 | || | |||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 218 CCTTAATGCG-GCTTGCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 160 Query 497 ACTGGCAG 504 |||||||| Sbjct 159 ACTGGCAG 152 >seq159694 Length=3858 Score = 178 bits (196), Expect = 4e-42 Identities = 138/162 (85%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG-TAAGGTACTATCAAATAAA 402 |||||||||||||||||||||||||| |||||||| ||| | ||||| ||| || || Sbjct 1368 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTTGGGTACGATCTAAGGAA 1427 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 | | ||||||||||||||||| ||||| ||||||| || | |||| ||| ||||| Sbjct 1428 CCACAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAATGCG-GCTTGCACTGAGACA 1486 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1487 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1528 Score = 154 bits (170), Expect = 4e-35 Identities = 200/282 (71%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || |||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 968 GTTCTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 1027 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| ||||| |||||||||||||||||||| Sbjct 1028 TCCCCGTTCCGGGAGTGGGTAATTTGCGCGCCTGCNNNNNNNNNNNNNNNNNNNNNNNNN 1087 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||| ||||||||||||||||| |||| ||| Sbjct 1088 -------GCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACCACCACGGT 1140 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||| |||| |||||||| |||||| ||||||| || | ||||||| Sbjct 1141 AGGCATGGAACCTACCGTCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 1200 Query 240 TC-AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCA 278 | || || |||||| | | |||||||| || |||||| Sbjct 1201 ACGGAGACCGTGCGATCAGCTCGAAGTTATTCAGAGTCACCA 1242 >seq137618 Length=2386 Score = 95.1 bits (104), Expect = 4e-17 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| |||| ||||||| | | | ||||| ||||||| Sbjct 29 TTTTATCTAATAAATGCATTCCTTCCGGAAGTTGGGGTTTGTTGAACGTATTCGCTCTAG 88 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 |||||| | |||||| || ||||| || ||| |||||| || Sbjct 89 AATTACTATGGTTATTCAAGTAGT-AGTTACCATCAAACAA 128 >seq146892 Length=1127 Score = 84.2 bits (92), Expect = 7e-14 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 445 ATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||| || ||| ||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1124 ATTGGTTCATAGTTACACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCA 1065 Query 504 G 504 | Sbjct 1064 G 1064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506363788288