Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq146431 156 3e-33 >seq146431 Length=15796 Score = 156 bits (172), Expect = 3e-33 Identities = 547/841 (65%), Gaps = 16/841 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || || ||| | || ||||| Sbjct 4669 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTATCACAAGAC 4610 Query 61156 ATGAATGACTGGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||||| | | | ||| ||| |||| || ||||| ||||| || | || Sbjct 4609 GGACGTGACTGGGAAAATCTCAACGA-CGGAGAACGTCACTTCATCAAACACGTCCTCGC 4551 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| |||||| || ||| | || ||| | || Sbjct 4550 CTTCTTCGCCGCATCTGACGGAATCGTCCTCGAAAATCTCGCTTCTCGATTCATGTCAGA 4491 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| || || |||||| |||||||| || || || || || |||||| |||| Sbjct 4490 TGTACAAGTCTCCGAAGCGCGTGCATTCTACGGATTTCAAATCGCGATTGAGAATATCCA 4431 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||||||| ||| | | ||||||| ||||||| || || | || | Sbjct 4430 TTCTGAGATGTATAGTCTCTTACTCGATACTTACATCAAAGATAACAAAGAGAGAGATCA 4371 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGC--GGAAAGCGGATTGGGCCTTC 61452 | ||| || |||| || || || ||| || |||||| | ||||| | Sbjct 4370 TCTATTCCGCGCAGTCGAAACAATTCC--TTGTGTTGCTAAGAAAGCTCAATGGGCTATG 4313 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 | |||||| | | | | || |||| ||||||| | | || || || || Sbjct 4312 ACTTGGAT---CGATGGATCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTT 4256 Query 61513 GAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || ||| | || ||| || | | | || | || || ||| | |||||||||||||| Sbjct 4255 GAAGGTATCTTCTTCTCAGGTAGCTTCTG-TTCGATTTTCTGGCTTAAGAAACGTGGACT 4197 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || | |||||| || || ||||| ||||| ||||| || | || ||||| Sbjct 4196 CATGCCTGGATTAACCTTCTCTAACGAATTGATCTCACGAGACGAAGGTTTACACTGTGA 4137 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 ||| ||| |||| | | | | || | ||| | || |||||||||| ||| Sbjct 4136 TTTCGCTTGTTTGATCTATACTCTCTTACGAACGAAGC-TC--ACGGAGGAGCGAGTGAA 4080 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 |||||| | || ||||| | || || || ||| || ||||| | || Sbjct 4079 GTCGATTGTGTGCGATGCGGTGGCGATTGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTG 4020 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | | | || ||||| ||||| | ||| ||||||||||| |||||||| || | Sbjct 4019 CGCGTTGGTTGGGATGAACCGTGGATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAG 3960 Query 61812 TCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCA 61870 || || ||| |||| || | || | ||| | | || || ||||||| | Sbjct 3959 GCTTTTGGGTGCGCTTGGCTACGGTAAGG-TGTATGGTGCTTCTAATCCGTTTGATTGGA 3901 Query 61871 TGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATC 61930 |||| | |||||||| | || || || |||||||| ||||| | || || || |||| Sbjct 3900 TGGAGTTAATTTCGCTTCAAGGGAAAACTAATTTTTTTGAGAAGAGAGTTGGTGATTATC 3841 Query 61931 A 61931 | Sbjct 3840 A 3840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273184137920