Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq224243 302 1e-77 seq83971 284 4e-72 seq53346 235 2e-57 seq198540 141 3e-29 seq132995 120 9e-23 >seq224243 Length=29995 Score = 302 bits (334), Expect = 1e-77 Identities = 245/297 (82%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 2677 GCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCT 2736 || ||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 29 GCGAACTCGATCCTCATCAAAGTTAACCAAATCGGTACGTTGACTGAAACATTCGACGCA 88 Query 2737 ATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACT 2796 ||||||||||||||| ||||||| ||||||||||| || || |||||||| |||||||| Sbjct 89 ATCGAAATGGCGAAAAAAGCTGGTTACACAGCAGTCGTTTCTCACCGTTCTGGTGAAACG 148 Query 2797 GAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGT 2856 ||||||||||| |||||||| || || ||||| || |||||||||||||| || || ||| Sbjct 149 GAAGATTCAACGATCGCTGACATCGCTGTTGCGACAAACGCTGGTCAAATCAAAACTGGT 208 Query 2857 TCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAA 2916 ||| | |||||||| |||||||| || |||||||||||| | || || ||||||||| Sbjct 209 TCACTTTCACGTACAGACCGTATCGCGAAATACAACCAACTTCTCCGCATCGAAGACATG 268 Query 2917 CTTGGTGAAGTTGCAGAATACCGTGGTTTGAAATCATTCTACAACTTGAAAAAATAA 2973 ||| || ||||| | ||| || | ||||||||||||||| | || || ||| Sbjct 269 CTTTCAGATGTTGCTGTCTACGACGGAATCAAATCATTCTACAACCTCAAGAAGTAA 325 >seq83971 Length=6707 Score = 284 bits (314), Expect = 4e-72 Identities = 342/465 (74%), Gaps = 0/465 (0%) Strand=Plus/Plus Query 1654 AAGGAGAGTATTGTAATGTCAATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCA 1713 |||||| | ||| ||||||||| ||||| || | || ||||| || | ||||| ||| Sbjct 6243 AAGGAGCGAATTTAAATGTCAATGATTACAGAGATTTATGCACGCGAGATTCTTGATTCA 6302 Query 1714 CGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGT 1773 ||||||||||||||| | |||||||||||||| || ||| || | || ||||||| Sbjct 6303 CGCGGTAACCCAACAGTAGAAGTAGAAGTTTATACAGAAGACGGCGGCTTTGGTCGCGCA 6362 Query 1774 ATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGAC 1833 | || || ||||| |||||||||||||| |||||||| || || ||||| ||||| ||| Sbjct 6363 CTCGTCCCATCAGGCGCATCAACTGGTGAGCACGAAGCTGTTGAGCTTCGCGATGGCGAC 6422 Query 1834 AAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATT 1893 ||| | |||||| ||| ||| |||||| ||||| ||||| ||| | || Sbjct 6423 AAATCACGTTACCTCGGTAAAGGTGTCTTAAAAGCTGTTGACAACGTCAACGAAAAAATC 6482 Query 1894 GCTGAGCACATCATCGGATTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATC 1953 || | |||||||| | ||| || || ||| || || ||| |||||| Sbjct 6483 GCACCTGAAATCATCGGCTACGATGTCTTCGACCAAGCGGGAATCGACAAAAAGATGATC 6542 Query 1954 GCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCT 2013 | || |||||||| |||||||||||| | || || ||||| || |||||||| ||| Sbjct 6543 GACCTCGACGGTACGAAAAACAAAGGTAACTTCGGCGCTAACGCAATCCTTGGTGTTTCT 6602 Query 2014 ATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGC 2073 || |||| ||||| || ||||| || | |||| |||||||||||| ||||| || Sbjct 6603 ATGGCTGCTGCACGTGCTGCTGCAGATGAGCTTGGTCTTCCACTTTACACGTACCTCGGT 6662 Query 2074 GGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATC 2118 ||||||||| | ||| | |||||||||||||||||||||||| Sbjct 6663 GGATTCAACGCGAAAACATTGCCAACTCCAATGATGAACATCATC 6707 >seq53346 Length=322 Score = 235 bits (260), Expect = 2e-57 Identities = 180/213 (85%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 |||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||||||| Sbjct 1 TAACCAAATCGGTACTTTAACTGAAACATTTGAAGCTATTGAAATGGCTCAAAAAGCTGG 60 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||||||||| | || ||||||||||||||||| |||||| | |||| ||||||| Sbjct 61 TTACACAGCAGTTATTTCTCACCGTTCAGGTGAAACAGAAGATACTTCAATTTCTGATAT 120 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || |||||||| || ||||||||||| || ||||||||| | ||| | || |||||||| Sbjct 121 CGCTGTTGCAACAAATGCTGGTCAAATCAAAACAGGTTCACTATCAAGAACAGACCGTAT 180 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 |||||||||||||||||| | ||||| ||||| Sbjct 181 TGCTAAATACAACCAATTATTACGTATTGAAGA 213 >seq198540 Length=57206 Score = 141 bits (156), Expect = 3e-29 Identities = 268/392 (68%), Gaps = 2/392 (1%) Strand=Plus/Minus Query 2519 AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAAT 2578 |||| || || || |||||||||| ||| | || || || ||||| |||||||| | Sbjct 27427 AATATCCTATTATTTCTATCGAAGACGGTCTTGATGAGTCAGATTGGGATGGTTGGAAGT 27368 Query 2579 CTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTA 2638 | | || |||| |||||| |||||| || || || ||||| || || || || || | Sbjct 27367 ATTTGACCGAACAAATTGGTGATAAAGTCCAGTTAGTCGGTGATGATTTATTTGTGACCA 27308 Query 2639 ACACTGCTTACCTTGAAA-AAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAA 2697 || || | | |||| || |||| |||| | ||| ||| || | || | || || Sbjct 27307 ACCCTACG-ATCTTGCAAGAAGGCATTGATAAGCACATTGCCAATGCGATTTTGATTAAG 27249 Query 2698 GTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCT 2757 | || || || ||||| || | ||||| | || || || | ||||||| || | Sbjct 27248 TTCAATCAGATTGGTACGTTATCAGAAACGCTAGATGCCATTTATCTGGCGAAGAAAAAT 27189 Query 2758 GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGAT 2817 || || || | | | || ||||| ||||||||||| ||||| || || || ||| Sbjct 27188 GGCTATGCAACCATCATCTCGCACCGCTCAGGTGAAACGGAAGACAGCACCATTGCAGAT 27129 Query 2818 ATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGT 2877 | || |||| || ||||||||||| || ||||| ||| ||| ||| | ||||| Sbjct 27128 TTAGCGGTTGGTACGGCTGCTGGTCAAATCAAAACAGGCTCACTGTGCCGTTCAGACCGC 27069 Query 2878 ATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 | || |||||||| || ||| | ||||| || Sbjct 27068 GTGGCAAAATACAATCAGTTGTTACGTATTGA 27037 >seq132995 Length=393 Score = 120 bits (132), Expect = 9e-23 Identities = 213/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 2602 AAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGT 2661 ||| ||||||| || || || || || ||||||||||| || | | ||||||| Sbjct 15 AAAATTCAATTAGTAGGAGATGATTTATTCGTAACTAATACCAATATTTTAAAAAAAGGA 74 Query 2662 ATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACT 2721 || | | || |||||| || || | |||||| | |||||||| ||||| || || Sbjct 75 ATAGAAAAAGGTATTGCTAATTCTATATTGATCAAATTAAACCAAATTGGTACATTAACC 134 Query 2722 GAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACAC 2781 || ||| |||| || || ||||||| ||||||||| || | | || |||| || Sbjct 135 GAGACTCTTGAAGCCATAAAAATGGCAAAAGAAGCTAATTATAGTGTTATAATATCTCAT 194 Query 2782 CGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGT 2841 || ||||||||||| ||||| || | || || ||| | | || | ||| || || Sbjct 195 CGATCAGGTGAAACAGAAGACGCATCTATAGCAGATTTATCTGTAGGAACATCAGCCGGA 254 Query 2842 CAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTT 2901 |||||||| || || || || ||| | || | | ||| ||||| || |||||| | Sbjct 255 CAAATTAAAACTGGCTCTATGAGCCGTTCAGATAGAACTGCGAAATATAATCAATTGATC 314 Query 2902 CGTATCGAAGA 2912 | || ||||| Sbjct 315 AGAATAGAAGA 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155543238274032