Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 643 1e-179
seq218717 150 2e-31
seq180749 127 2e-24
seq207321 91.5 2e-13
>seq28607
Length=83266
Score = 643 bits (712), Expect = 1e-179
Identities = 713/951 (75%), Gaps = 0/951 (0%)
Strand=Plus/Minus
Query 159845 GGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTC 159904
|| ||||| || || |||||||||| || | ||| | |||||| | || || ||
Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401
Query 159905 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 159964
|| ||||| |||||||| || || || || ||||| || |||||||| || |||| ||
Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341
Query 159965 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 160024
|| | ||||| ||||| || || || ||||| || |||| |||| || ||||||
Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281
Query 160025 CTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGT 160084
| || || || || || |||||||| ||||| | || || ||||| || ||||| |||
Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221
Query 160085 CCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAG 160144
|||| |||| | || | ||||| | | || | | |||||||||||||||
Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161
Query 160145 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCA 160204
|||||||| || |||||| ||||||||||| ||||| ||||||||| || |||||
Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101
Query 160205 GTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGAT 160264
|| || ||||| ||||||| ||| | ||||||| | ||||| || ||| || |||
Sbjct 1100 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1041
Query 160265 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACAC 160324
| ||||||||| || |||||||||||||| |||| |||| |||||||||| || || |||
Sbjct 1040 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 981
Query 160325 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTG 160384
|| || |||||||| || || |||||| | ||||| ||||| |||||||| || || ||
Sbjct 980 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 921
Query 160385 TTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACT 160444
|| |||||||||||| || |||| ||||||||| | |||| || || ||||||| |
Sbjct 920 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 861
Query 160445 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCA 160504
|| || || | |||||||| ||||| ||||| ||||| ||||||||||| || ||
Sbjct 860 GAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 801
Query 160505 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 160564
|| ||||| || || || || ||||||||||||||||| || ||||| || || |||
Sbjct 800 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 741
Query 160565 CTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTT 160624
| || |||||| | || |||||||| || || || || ||||| ||||| | ||| ||
Sbjct 740 TTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATT 681
Query 160625 TCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAA 160684
|||||||| ||||| || ||||||||||| |||||||| || | | || | |||
Sbjct 680 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 621
Query 160685 GGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTC 160744
|||| ||| | || |||||||| || | ||||||| ||| || || ||||||||
Sbjct 620 GGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 561
Query 160745 ATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 160795
||||| || ||||| ||||||||||||||||| ||||| ||||||| ||||
Sbjct 560 ATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 551 bits (610), Expect = 6e-152
Identities = 722/993 (73%), Gaps = 5/993 (1%)
Strand=Plus/Plus
Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604
|| || ||||||||||| || |||||||| || | || ||||| ||| ||| | |||
Sbjct 32434 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32493
Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664
| || |||||| | || || || || || | || |||||||| |||||| | |||
Sbjct 32494 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 32553
Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724
||||||||| | || ||| |||||| | || || || ||| ||||| ||| | |
Sbjct 32554 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGT 32613
Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783
| | |||||| || || || || ||||||||||| || ||||| ||||| | ||
Sbjct 32614 TTAGCGCATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 32672
Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGG 161843
| ||| | || || || ||| |||||| || |||||||| |||||||| | || ||
Sbjct 32673 GTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGG 32732
Query 161844 ATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTA 161902
|| ||| | ||||| |||||||||||||| || || | | || ||||| ||||| |
Sbjct 32733 TTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGACCTTATAATGCAA 32791
Query 161903 TTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGAC 161962
| || ||||||||||| |||||||||||||| ||||| || || ||||| ||||| |
Sbjct 32792 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTGGGTC 32851
Query 161963 AGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT 162022
| || |||||||| ||||| ||||| || || ||||| || | ||| | || |
Sbjct 32852 AATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCT 32911
Query 162023 TCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTA 162082
| | ||||| || || |||||||| | || || || || |||||||| ||||| |||
Sbjct 32912 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTG 32971
Query 162083 TCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACC 162142
| |||| | ||| |||| | |||||||| |||| ||||| ||||| || | |
Sbjct 32972 TACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 33031
Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202
|||||||||| |||||||| ||| |||||| || | || |||| || || ||||
Sbjct 33032 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 33091
Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262
| || ||||| || || ||||| || |||||||| ||||| || |||||||| ||||
Sbjct 33092 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 33151
Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322
| |||||||| |||||||||||| | || || || || | ||| | |||| ||| ||
Sbjct 33152 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 33211
Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382
| || | | || || ||| | || || ||||| || ||||| || || ||||| || |
Sbjct 33212 TTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 33271
Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442
|||||||||| ||||| |||||||| || ||||| || || ||||| || || || ||||
Sbjct 33272 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 33331
Query 162443 GTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGG 162502
|| ||||||| ||| |||| | ||||| || ||||| ||| || ||||||||||||
Sbjct 33332 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 33391
Query 162503 AAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535
| ||||| || | || ||||| || | |||||
Sbjct 33392 AGGTTCTACCACGTGGAAACGCTCT-TTAATGG 33423
>seq218717
Length=448
Score = 150 bits (166), Expect = 2e-31
Identities = 166/220 (75%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189
|||||| |||||||||||||||| || |||| ||||||||||| ||||| ||||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 160190 GCATACTCTGCTCCAG-TCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248
||||| || ||||| | | || |||||| || ||| ||| | | || || | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308
|| ||| | ||| ||||||||| || |||||| ||||||| |||| ||| ||||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 160348
|||||| || || ||||| || |||||||| || || |||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq180749
Length=15184
Score = 127 bits (140), Expect = 2e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028
|| ||||| ||||| ||||| |||||||| | || || ||||| || || |||||
Sbjct 10955 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGT 11014
Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088
| || |||| ||||| ||||| || || ||| ||||| ||||| ||||| || |
Sbjct 11015 TCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGATCAGTCTGACCAGAGT 11074
Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148
||||| ||||||||||| ||| ||||||||| || || || | ||||||||| ||
Sbjct 11075 TTCCTCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 11134
Query 161149 TCTGATGTAACTATT 161163
|||||||| || |||
Sbjct 11135 TCTGATGTTACCATT 11149
>seq207321
Length=8752
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028
|| ||||| ||||| ||||| ||||| || | || || ||||| || ||| |||||
Sbjct 6171 TACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGATTTGCCTTACTCATGCCGTTCTGGT 6230
Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088
||||||||| || || ||||| | | ||| || || || || || |||
Sbjct 6231 TCTTGCTCTAGCTGCGCCGGTAAACTCGTCTCTGGCTTCGTTGACCAGTCCGACCAAAGC 6290
Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148
||| |||| || || ||| | ||| ||| | |||| | ||||| || ||||| || |||
Sbjct 6291 TTCTTGGACGACGACCAAATGGAAGAAGGCTATGTCTTAACCTGTGTCGCTTACCCAACT 6350
Query 161149 TCTGATGTAACTATT 161163
|||||||| || |||
Sbjct 6351 TCTGATGTCACCATT 6365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549534211178400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |