Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq28607 607 1e-168 seq218717 114 2e-20 >seq28607 Length=83266 Score = 607 bits (672), Expect = 1e-168 Identities = 734/991 (74%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| | ||| | ||| ||| | || ||||| || | || ||||| ||||| || Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| ||| | | | ||||| | || || |||| || | ||||| || Sbjct 1442 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || ||||| |||||||| || || ||||| || |||| || || | || |||||||| Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 || || || ||||| || | ||| | || || |||||| | || || ||||| || Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 1264 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 ||||||||| || || | ||||| ||||| |||||||| ||||||| |||| | || Sbjct 1263 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1204 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTA 189206 | ||||| | | || | || || | | |||||||||||||||||||| || Sbjct 1203 TCTACACTTTTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 1147 Query 189207 CCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCAT 189265 |||||| ||||||||||||||||| ||| |||| || || || ||||||||||| ||| Sbjct 1146 CCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAA 1088 Query 189266 CCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGG 189325 | || || || || |||| || |||||||||| ||| ||||| | ||||| | | Sbjct 1087 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAG 1028 Query 189326 GTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 189385 | ||| ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||| Sbjct 1027 GAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGC 968 Query 189386 ACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGC 189445 |||| || |||||| | || || || ||||| ||||| || || || || || |||| Sbjct 967 ACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGC 908 Query 189446 ATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACT 189505 ||||||| | || || ||| || | | |||||||| |||| || || || Sbjct 907 ATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 848 Query 189506 ATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATT 189565 | |||||||| || ||||||||||||||||| |||||||| || ||||||||||| |||| Sbjct 847 AAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATT 788 Query 189566 TCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCC 189625 | || || | |||||||||||||| |||||||| || ||||| | || |||||| Sbjct 787 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 728 Query 189626 TCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCAT 189685 | || || ||||| || || ||||| |||||||| || | || | ||||||||||| | Sbjct 727 TAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTT 668 Query 189686 TCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGA 189745 ||||||| ||||| ||||| ||||| ||||| | ||||| ||||||| |||||| | | Sbjct 667 TCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTA 608 Query 189746 ACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTA 189805 | || ||||| || || | ||||||||| |||||||||||||| |||||||| |||| Sbjct 607 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 548 Query 189806 ACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 | ||||||||||||||||| || || || || Sbjct 547 ATGCTCACAACTTCCCTCTAGACCTAGCTGC 517 Score = 545 bits (604), Expect = 3e-150 Identities = 731/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || |||||||| |||||||| |||| || || ||| | ||||| |||||||| || || Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 || || | | || ||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 32764 TCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32822 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | ||||| || || || || ||||||||||| |||||||||| ||||| || || Sbjct 32823 TTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32882 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 ||| || || || || || ||| ||||||| || || || || ||||| ||||| |||| Sbjct 32883 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32942 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 ||| || || |||||||| || || ||| | ||||| | || || || | || || || Sbjct 32943 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCA 33002 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||||| |||||||| |||||||| | |||||||||||| ||||| || || || Sbjct 33003 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33062 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 33063 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33122 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||||||||| ||||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 33123 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33182 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | | | || | | || || ||| | ||||| || Sbjct 33183 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 33242 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || ||||| || ||| | ||||| |||||||| || || |||||||| Sbjct 33243 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33302 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 || || |||||||| ||||| || |||||| ||||| | ||| |||| || ||||| Sbjct 33303 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33362 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| || || |||| || || || || | ||| | || |||||||| Sbjct 33363 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416 >seq218717 Length=448 Score = 114 bits (126), Expect = 2e-20 Identities = 158/220 (72%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATT 189237 || ||| |||||||||||||||| || |||| ||||||||||||||||| || Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 189238 GCTTACTCTGCACCTGTT-GCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 || || || || |||||| ||||| || | || || || | ||||| ||||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGT 189356 ||| ||| | | | | ||||| | || ||| | | || ||||||| || |||| Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 189357 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAC 189396 ||||| || ||||||||||| || |||||||| || ||| Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631961950872000