Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq396017 125 4e-27 seq196146 107 1e-21 seq139656 89.7 3e-16 seq44610 82.4 4e-14 seq263237 77.0 2e-12 >seq396017 Length=8487 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 2799 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 2740 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2739 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2683 >seq196146 Length=1550 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||||| ||||| | |||||| | Sbjct 493 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTATAAGCAACATCCGTC 552 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| || ||||| ||||| |||| |||||| ||||||||||||||||||| || Sbjct 553 GATCCCTGGTTGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTTGA 609 >seq139656 Length=992 Score = 89.7 bits (98), Expect = 3e-16 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||| || ||||||||||||| ||||||| || ||||| | |||||| ||| Sbjct 14 AACCCCAAAACTTTGATTTCTCATAAGGTGTTGACAGAGTCCTATAAGCAACATCCACCG 73 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| | ||| |||| |||| ||||||||||| ||| ||||||||| | |||| Sbjct 74 ATCCTTGGTCTGCATCATTTATGGTTAAGACTAGGACAGTATCTGATAGCCTTC 127 >seq44610 Length=2545 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGA-CTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT-AACATCGC 58 ||||||||| | |||||||||||| |||||||| | ||||| || || |||||| Sbjct 43 GAACCCAAAAAACTTTGATTTCTCATAAGGTGCGAACAGAGTC-CTATAATCAACATCCT 101 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||||||||| ||| ||||| |||| |||||| ||| |||| ||| |||| || Sbjct 102 CTAATCCCTAGTCGACATCGTTTATGGTTGAGACTAGGACAACATCTAATCATCTTTGA 160 >seq263237 Length=980 Score = 77.0 bits (84), Expect = 2e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| |||| ||| |||||||| ||||| |||| |||| | ||||||||||||||| Sbjct 615 AACATCCATCGATTCCTGGTCGGCATCGTTTATGGTTGAGACGAGGACGGTATCTGATCG 674 Query 111 TCTTCGA 117 ||||||| Sbjct 675 TCTTCGA 681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277366374750