Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq396017 127 2e-27 seq139656 122 9e-26 seq196146 118 1e-24 seq204053 109 6e-22 seq367070 91.5 2e-16 seq44610 89.7 5e-16 >seq396017 Length=8487 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 2436 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2495 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 2496 GGGATAACATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 2553 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 2554 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2613 Query 190 T 190 | Sbjct 2614 T 2614 >seq139656 Length=992 Score = 122 bits (134), Expect = 9e-26 Identities = 136/178 (76%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| ||||| Sbjct 373 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGTATACATTAGCATGGG 314 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | | | ||||||||| || | | ||| | |||||||| | Sbjct 313 ATAACATCATAGGATTT-CAATCCTATTTTGTTGGCCTTTGGGATCAGA-GTAATGATTA 256 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||| ||| | || || || |||||||||||||||||| ||||||| Sbjct 255 ACAGGGACAGTCGAGGGCATTCGTTTTTCATAGTCAAAGGTGAAATTCTTAGATTTAT 198 >seq196146 Length=1550 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 856 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTTTGTATACATTAGCAT 797 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| ||||||| Sbjct 796 GGGATAACATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATTAGA-GTAATGA 739 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||||||||||||| | ||||| || |||| |||| ||||||||||||||| Sbjct 738 TTAATAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTTAAATTCTTGGATTTA 679 Query 190 T 190 | Sbjct 678 T 678 >seq204053 Length=2206 Score = 109 bits (120), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| || | |||||||| ||| Sbjct 820 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTTTGTATACATTAGCAT 879 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | | ||||||||| || | |||| | |||||| Sbjct 880 GGGATAACATGATAGGATTTT-GATCCTATTTTGTTGGCCTTCAGGATTGGA-GTAATGT 937 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | ||| |||||||| |||| | ||||| || || | |||||||||||||||||||| Sbjct 938 TTAATTAGGATAGTCAGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTA 997 Query 190 T 190 | Sbjct 998 T 998 >seq367070 Length=7107 Score = 91.5 bits (100), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC-TCGAATACATTACCAT 69 || |||||||||| ||||||||| | |||||| | |||| | | | |||||||| ||| Sbjct 2356 CTATTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCTACACATTGTATACATTAGCAT 2297 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || ||| || |||||| | | | ||||| | | || | |||| | |||| | Sbjct 2296 GGGATATTATTATAGGATTTT-GATCCTATTCTATTGGCCTTCAGGATCAAAA-TAATTA 2239 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||||||||| ||| | |||| || |||||||||||||||||| |||||| Sbjct 2238 TTAACAAGGATAGTCGAGGGCATTCATATTTCATAGTCAAAGGTGAAATTCTTAGATTTA 2179 Query 190 T 190 | Sbjct 2178 T 2178 >seq44610 Length=2545 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCATGGA 72 |||||||||| ||||||||| | |||||| |||| |||| | ||||| || ||||| Sbjct 403 TTACTTTGAAGAAATTAGAGTGCCTAAAGCAAGCCTATGCTTTATATACACTAGCATGGG 344 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | | || |||| | | || | ||||| | |||||||| | Sbjct 343 ATAACATCATAGGATTTT-GTTTTTATTCTATTGGCCTTTAGGATCAGA-GTAATGATTA 286 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| | | ||| | ||||| || |||| ||||||||||||||||||||| Sbjct 285 ACAGGGACGATTGAGGGCTTTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510035716000