Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq302503 235 9e-60 seq396017 107 3e-21 seq58609 87.8 3e-15 seq352053 84.2 4e-14 seq316011 84.2 4e-14 seq250982 84.2 4e-14 seq303973 77.0 5e-12 seq170838 77.0 5e-12 >seq302503 Length=234 Score = 235 bits (260), Expect = 9e-60 Identities = 176/201 (88%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 3 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 60 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 61 GCCGCGAAGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 120 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTC-GGCCCCGA 178 ||||| || ||| | || |||| | ||||| ||||||||||||| |||| |||| ||| Sbjct 121 GAACGCGGCGATATTGCCCCGCACGTTGTAGTTGGATACGAATAGGCCTTCGGGCCACGA 180 Query 179 ACCTTAGCAGGCCGGCAACGG 199 |||| ||||||| ||| |||| Sbjct 181 ACCTCAGCAGGCTGGCGACGG 201 >seq396017 Length=8487 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 7168 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 7225 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 7226 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 7285 Query 121 GAA 123 ||| Sbjct 7286 GAA 7288 >seq58609 Length=2386 Score = 87.8 bits (96), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || ||| |||||||||| | | || ||| | ||| Sbjct 2217 GTACGAGAGGAACCGTAGGTTT-AGAC-AATTGGTTTT-GTGTTTGATTGAAAAATCAGA 2161 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | || ||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 2160 GGCACTAAACTACCATCTAATGGATTATGACTGAACGCCTCTAAGTCAGAATCCAATCCA 2101 Query 121 GA 122 || Sbjct 2100 GA 2099 >seq352053 Length=411 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | | || ||| || |||| Sbjct 67 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCACACTTGGTTGAAAAGCCAGT 124 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| | ||||||||||| || ||||||||||||||||||||| || | Sbjct 125 GGGGCGAAGCTACTGTGCGCTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCTA 184 Query 121 GAA 123 ||| Sbjct 185 GAA 187 >seq316011 Length=1654 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || ||| | | ||||||| | | | || ||| || |||| Sbjct 1648 GTACGAGAGGAACCATTGA-TTC-GCACAATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 1591 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||| | ||||||||||| ||||| ||||| ||||||||||| Sbjct 1590 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAAAGCCTCAAAGTCAGAATC 1538 >seq250982 Length=275 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||| Sbjct 15 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCTAGT 72 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||| |||||| | | |||||||||||| ||||||||||| | ||||||||| Sbjct 73 GGCGCAAAGCTATCGTGTGCTGGATTATGACTGAACGCCTCAATGTCAGAATC 125 >seq303973 Length=586 Score = 77.0 bits (84), Expect = 5e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||||| |||||||||||| | ||||||||||| ||||||| ||||||||||||||| Sbjct 236 CAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGTCTCTAAGTCAGAATC 180 >seq170838 Length=1463 Score = 77.0 bits (84), Expect = 5e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||||| |||||||||||| | ||||||||||| ||||||| ||||||||||||||| Sbjct 3 CAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGTCTCTAAGTCAGAATC 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816057145600