Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq221711 89.7 1e-15 seq221684 86.0 1e-14 seq221842 84.2 4e-14 seq221723 80.6 5e-13 seq220698 80.6 5e-13 >seq221711 Length=596 Score = 89.7 bits (98), Expect = 1e-15 Identities = 210/311 (68%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 506 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCTAGGGCTC 447 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | ||||||||| ||| | | | | || || |||||| Sbjct 446 ---TGACCGCGTGCCTGTTGAAGAATGAGCCTGCGACTCA-TAGGCAGTGGCTTGGTTAA 391 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 390 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 335 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | | Sbjct 334 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 275 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 274 GGAGGCCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 215 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 214 GCCACTCGAAC 204 >seq221684 Length=530 Score = 86.0 bits (94), Expect = 1e-14 Identities = 211/314 (67%), Gaps = 17/314 (5%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 448 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCTAGGGCTC 389 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 388 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 333 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | |||| Sbjct 332 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAA----TTGGCACT 280 Query 189 GCTA---GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGT 245 ||| ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 279 GCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTA 220 Query 246 GATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGA 305 |||||| |||||||| | |||||| | | ||||||| | | || ||||||||| Sbjct 219 AGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGA 160 Query 306 AAGGCCAATCAAAC 319 || |||| || ||| Sbjct 159 AATGCCACTCGAAC 146 >seq221842 Length=625 Score = 84.2 bits (92), Expect = 4e-14 Identities = 209/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGC---GGTCGGAGCCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| ||| |||||| || | | Sbjct 430 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGTAGGAGCCTAGGGCTC 371 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 370 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 315 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 314 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 259 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| |||| ||| | | | Sbjct 258 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGACGAAGCTTGGGTGAAACTAAGT 199 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 198 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 139 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 138 GCCACTCGAAC 128 >seq221723 Length=523 Score = 80.6 bits (88), Expect = 5e-13 Identities = 208/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| | ||||| || |||| || || | | Sbjct 413 GGGGAGTGAAATAGAACATGAAACCGTAAGATCCCAAGCAGTGGGAGGAGCCTAGGGCTC 354 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 353 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 298 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 297 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 242 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | | Sbjct 241 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGATTGGGTGAAACTAAGT 182 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 181 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 122 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 121 GCCACTCGAAC 111 >seq220698 Length=883 Score = 80.6 bits (88), Expect = 5e-13 Identities = 208/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 792 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCTAGGGCTC 733 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 732 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 677 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| || || || ||||||||| ||| | ||||| | || || Sbjct 676 GGGAACCCA--CCGG-AGTCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 621 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| |||| | |||||||| ||| | || | ||||| ||| | | | Sbjct 620 TATAGACCCGAACCTGGGTGATCTATCCATCACCAAGATGAAGCTTGGGTGAAACTAAGT 561 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | | |||||| | | ||||||| | | || ||||||||||| Sbjct 560 GGAGGTCCGAACCGATTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 501 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 500 GCCACTCGAAC 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 970641794560