Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq11510 78.8 4e-12 seq51588 75.2 4e-11 >seq11510 Length=3142 Score = 78.8 bits (86), Expect = 4e-12 Identities = 83/109 (76%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 39 AAGCCACACGGACAAAAAAGGCC---ACCAGCAAAGTCACCACCTAAAGCTTCTTCATCT 95 ||||| | || |||||| ||| ||| | ||||| | | || |||||||| ||| Sbjct 2029 AAGCCTAATGGCCAAAAACAGCCTAGACCGCCGAAGTCTTCTTCAAAGGCTTCTTCGTCT 1970 Query 96 AATCCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA 144 ||||| || ||||||||||| |||||||||||||| | | |||||||| Sbjct 1969 AATCCGGAGGAGCTGGAGATAGAGATTGCTGAAGTCTTGTATGGTTTGA 1921 >seq51588 Length=1420 Score = 75.2 bits (82), Expect = 4e-11 Identities = 102/142 (72%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 6 TCTTCATCTAATGTTTCAGTGAGAAAGAAAATTAAGCCACACGGACAAAAAAGGCC---A 62 || || || |||| |||| ||||||| |||||||| | || ||||| ||| | Sbjct 113 TCGTCTTCGAATGCTTCAACTCGAAAGAAGATTAAGCCTAATGGCAAAAAACAGCCTAGA 172 Query 63 CCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAATCCTGAAGAGCTGGAGATTGAGATT 122 | | ||||| | | || ||||||| |||||||| || ||||||||||| || ||| Sbjct 173 CTGCCCAAGTCTTCTTCCAAGGCTTCTTTGTCTAATCCGGAGGAGCTGGAGATAGAAATT 232 Query 123 GCTGAAGTTCTTTTTGGTTTGA 144 ||| |||| | | |||||||| Sbjct 233 GCTCAAGTCTTGTATGGTTTGA 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1960304773990