Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq29745 87.8 2e-15 seq39210 86.0 7e-15 seq2500 86.0 7e-15 seq175065 84.2 3e-14 seq89551 84.2 3e-14 seq49041 84.2 3e-14 seq44529 84.2 3e-14 seq40494 84.2 3e-14 seq27299 84.2 3e-14 seq11574 84.2 3e-14 seq2228 84.2 3e-14 seq205055 80.6 3e-13 seq142330 80.6 3e-13 seq114931 80.6 3e-13 seq52969 80.6 3e-13 seq52468 80.6 3e-13 seq36288 80.6 3e-13 seq2 80.6 3e-13 seq174096 78.8 1e-12 seq151901 78.8 1e-12 seq32456 78.8 1e-12 seq6599 78.8 1e-12 seq137961 73.4 5e-11 seq86646 73.4 5e-11 seq54830 73.4 5e-11 seq8205 73.4 5e-11 >seq29745 Length=2374 Score = 87.8 bits (96), Expect = 2e-15 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 15 AACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAG 73 |||| |||||| || | |||||| | |||| |||||||||||||| | | ||||||| Sbjct 2032 AACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTAAG 2090 Query 74 CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 | |||||||||||||||||||| |||| |||| || |||| Sbjct 2091 CTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAGCGCTGG 2132 >seq39210 Length=2379 Score = 86.0 bits (94), Expect = 7e-15 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 15 AACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAG 73 ||||||||||| || | |||||| | |||| |||||||||||||| | | ||||| | Sbjct 643 AACAAAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTAGG 585 Query 74 CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 | |||||||||||||||||||| |||| |||| || Sbjct 584 CTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 549 >seq2500 Length=1813 Score = 86.0 bits (94), Expect = 7e-15 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GC 68 || |||||| |||||| || | |||||| | |||| |||||||||||||| | | || Sbjct 493 AAGCCAACAGAATAGGATCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGC 551 Query 69 GTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||| || |||||||||||||||||||| |||| |||| || Sbjct 552 GTAGGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 592 >seq175065 Length=212 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 108 CCAACAGAATAGG-ACTGAAATCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 50 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 49 CGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAATAG 12 >seq89551 Length=1050 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 798 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 740 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 739 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 702 >seq49041 Length=1206 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 158 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 100 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 99 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 62 >seq44529 Length=1139 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 167 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 225 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 226 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 263 >seq40494 Length=2430 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 1934 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 1992 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 1993 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 2030 >seq27299 Length=3043 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 560 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 618 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 619 GGCTTGCTTTGAACACTCTAATTTGTTCAAAGTAACAG 656 >seq11574 Length=2129 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 1456 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 1514 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 1515 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 1552 >seq2228 Length=1235 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 574 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 632 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 633 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 670 >seq205055 Length=898 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTAT-TCGGGCGTA 71 |||| | |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 227 CCAATAGAATAGG-ACTGAAATCCTATGTTGTTATCCCATGCTAATGTATCTAGAGCGTA 169 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 168 CGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 131 >seq142330 Length=811 Score = 80.6 bits (88), Expect = 3e-13 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 15 AACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAG 73 |||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| | Sbjct 78 AACAGAATAGG-ACTGAAATCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTACG 136 Query 74 CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 | |||||||||||||||||||| |||| |||| || Sbjct 137 CTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 172 >seq114931 Length=565 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 222 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 280 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 281 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 318 >seq52969 Length=1703 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | ||||| Sbjct 1597 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCATAGCGTA 1655 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 1656 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 1693 >seq52468 Length=2404 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | | ||| Sbjct 168 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGTGTA 226 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 227 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 264 >seq36288 Length=1189 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 293 CCAACGGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 351 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 352 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 389 >seq2 Length=1022 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | || ||| | |||| |||||||||||||| | | ||||| Sbjct 615 CCAACAGAATAGGACCGAAA-TCATATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 673 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 674 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 711 >seq174096 Length=522 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| ||| |||||||||| | | ||||| Sbjct 429 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCACGCTAATGTATCCAGAGCGTA 487 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||||||||||||||| |||| |||| Sbjct 488 GGCTTGCTTTGAACACTCTAATTTCTTCAAAGTAA 522 >seq151901 Length=489 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 74 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 132 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAA 101 || |||||||||||||||||||| |||| Sbjct 133 GGCTTGCTTTGAACACTCTAATTTCTTCAA 162 >seq32456 Length=5800 Score = 78.8 bits (86), Expect = 1e-12 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 14 CAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGG-CGTAA 72 ||||| |||||| || | ||||||| | |||| |||||||||||||| | | ||| Sbjct 883 CAACAGAATAGGACCGAA-GTCCTATGTTGTTATCCCATGCTAATGTATCCAGAACGTCG 941 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 942 GCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 978 >seq6599 Length=2255 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 805 CCAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTA 747 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||||||||||||||| | || |||| Sbjct 746 GGCTTGCTTTGAACACTCTAATTTCTTAAAAGTAA 712 >seq137961 Length=693 Score = 73.4 bits (80), Expect = 5e-11 Identities = 57/67 (85%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 44 TTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAG 102 |||| |||||||||||||| | | ||||| || |||||||||||||||||||| |||| Sbjct 420 TTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAACACTCTAATTTCTTCAAA 479 Query 103 GTAAAAG 109 |||| || Sbjct 480 GTAACAG 486 >seq86646 Length=612 Score = 73.4 bits (80), Expect = 5e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| | |||| |||||||||||||| | | ||||| | ||||||||||||||||| Sbjct 15 TCCTATGTTGTTATCCCATGCTAATGTATCCAGAGCGTAGGATTGCTTTGAACACTCTAA 74 Query 93 TTTTCTCAAGGTAAAAG 109 ||| |||| |||| || Sbjct 75 TTTCTTCAAAGTAACAG 91 >seq54830 Length=856 Score = 73.4 bits (80), Expect = 5e-11 Identities = 57/67 (85%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 44 TTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAG 102 |||| |||||||||||||| | | ||||| || |||||||||||||||||||| |||| Sbjct 677 TTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAACACTCTAATTTCTTCAAA 736 Query 103 GTAAAAG 109 |||| || Sbjct 737 GTAACAG 743 >seq8205 Length=3132 Score = 73.4 bits (80), Expect = 5e-11 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 14 CAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAA 72 ||||| |||||| || | |||||| | |||| || ||||||||||| | ||||| Sbjct 703 CAACAGAATAGGACCGAAA-TCCTATGTTGTTATCCCTTGCTAATGTATCCAAAGCGTAG 645 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||||||||||||||| |||| |||| || Sbjct 644 GCTTGCTTTGAACACTCTAATTTCTTCAAAGTAACAG 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593920784070