Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq34486 176 4e-39 >seq34486 Length=7597 Score = 176 bits (194), Expect = 4e-39 Identities = 386/575 (67%), Gaps = 5/575 (1%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || || |||||| |||||||| ||||| || |||||||||| Sbjct 3497 TGTTCCCAATCCAATACCCTGAGATTTGGGAGATGTACAAGAAGGCTGAGGCTTCCTTCT 3556 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||| |||||| | || ||| | | ||||| | | || Sbjct 3557 GGACTGCCGAGGAAGTCGATCTCTCTGTAGATGTTTCCCAGTGGGAAAAACTTACCCCCG 3616 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 ||||| ||| || |||| || || | || |||||||||||||| || || || || Sbjct 3617 ATGAACGACACTTTATTACTCACGTTCTTGCCTTCTTTGCCGCTTCAGATGGCATTGTTC 3676 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | |||||| | ||||||| || || || ||||| ||| ||||| Sbjct 3677 TGGAGAATCTCGCCGGTCGTTTCATGAAGGAGGTCCAGGTTTCCGAGGCCCGTGCTTTCT 3736 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 | || || || || ||||| |||||| | ||||| |||||||| ||| | || | || | Sbjct 3737 ATGGTTTTCAAATAGCCATCGAGAATATTCACTCCGAGATGTATAGTCTCCTGTTGGAGA 3796 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 ||||||| | ||| | || | | | | | ||| | || |||||||| || || Sbjct 3797 CGTACATTAAGGATTCCAACGAGAAGCACAGGCTCTTTC-ACGCAATCGAGACCATCCCT 3855 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTT 61482 ||| | |||||| | |||||| || | ||||| | | || | | || Sbjct 3856 TGCGTGGAAAAGAAAGCCAAGTGGGCCCTCCAATGGATAGACGGCTCA---GAATCCTTC 3912 Query 61483 GGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCC 61542 | || || ||| | || || || || ||||| |||||||| ||| ||| | Sbjct 3913 GCCGAGCGTTTGGTTGCTTTCGCTTGCGTTGAGGGAATATTTTTCTCCGGAAGCTTTTGC 3972 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTG 61602 |||| |||||||| || || ||||| | |||||||| | |||||| || |||||| Sbjct 3973 TCAATTTTTTGGTTAAAAAAGCGTGGTTTATTGCCCGGTTTAACCTTCTCGAACGAGTTG 4032 Query 61603 ATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || || | |||||||| | |||||||| ||||| Sbjct 4033 ATTTCGAGGGACGAGGGTCTTCATTGTGACTTTGC 4067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396493032657200