Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3496 197 3e-48 seq3682 170 4e-40 seq6409 131 3e-28 seq23728 122 2e-25 seq20112 100 6e-19 seq3592 95.1 2e-17 seq4230 78.8 2e-12 >seq3496 Length=200309 Score = 197 bits (218), Expect = 3e-48 Identities = 228/305 (75%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||| | || || ||||||||||||||||||||| Sbjct 182143 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 182202 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||| ||||||||||||||||||||| | ||| |||||| | | ||||| ||| Sbjct 182203 GAGTCTGGGCGGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCGGACTAGCTACTGAT 182262 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| ||||| | |||| ||||||||||| |||||| | ||||||||| |||| Sbjct 182263 CATCGCCTTGGCAAGTTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCTTCGG 182322 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 182323 GCAGATTCCTCCTT------------TTGC--TCCTCAGTC--TACGGGGTATTAGCAGC 182366 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||| || | Sbjct 182367 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTAACGCGTTACTCACCCATCTG 182425 Query 300 CCACT 304 ||||| Sbjct 182426 CCACT 182430 >seq3682 Length=3594047 Score = 170 bits (188), Expect = 4e-40 Identities = 222/305 (73%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| ||| ||||||| | || || |||||||| || |||||||| Sbjct 3524922 GGCTTTGCTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGTTGTCTCCCGTAA 3524863 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||| || ||||||||||||||| |||||| | ||| ||||| | || ||| | ||| Sbjct 3524862 GAGTCTAGGTCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTAGGACCAGCTTCTGAT 3524803 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||||||| ||||||||||| |||||| | ||||||||| || | | Sbjct 3524802 CATCGCCTTGGTAAGCTATTACCTCACCAACTAACTAATCAGACGCGAGCCCCTCCTCGA 3524743 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| ||||| ||| | ||| | | || | ||||||||| | Sbjct 3524742 GCGGATTCCTCTTT------------TTGC--TTCTCAGCC--TACGGGGTATTAGCCGT 3524699 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| || || || ||||| || ||| |||| ||||| || | Sbjct 3524698 CGTTTCCAGCTGTTGTTCCCGTCCCAAGGGTAGGTT-CTTACGCGTTATTCACCTTTCTG 3524640 Query 300 CCACT 304 ||||| Sbjct 3524639 CCACT 3524635 >seq6409 Length=3949 Score = 131 bits (144), Expect = 3e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 98 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 157 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 ||||||||||||||||||||||||| |||||| | ||| |||||| | || |||| Sbjct 158 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 212 >seq23728 Length=2977665 Score = 122 bits (134), Expect = 2e-25 Identities = 115/147 (78%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||| |||||||||||||||| Sbjct 394949 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTTCCCACTGCTACCTCCCGTAGGAGTCT 394890 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| |||||||||||||||||||| | ||| |||||| | | | |||| ||| Sbjct 394889 GGGCCTTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCGGAC------CTGATCATCGC 394836 Query 127 CTTGGTGGGCTATTATCTCACCAACTA 153 |||||| |||||| ||| ||||| Sbjct 394835 CTTGGTAAGCTATTGCTTCATTAACTA 394809 Score = 118 bits (130), Expect = 2e-24 Identities = 114/147 (78%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||| | |||| |||||| | || || |||||||||||||||||||||||||| Sbjct 376805 GCTCCGTCAAGCTTTCGTCCATTGCGGAAAATTTCCCACTGCTGCCTCCCGTAGGAGTCT 376746 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| |||||||||||||||||||| | ||| |||||| | | | |||| ||| Sbjct 376745 GGGCCTTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCGGAC------CTGATCATCGC 376692 Query 127 CTTGGTGGGCTATTATCTCACCAACTA 153 |||| | |||||| ||| |||||| Sbjct 376691 CTTGATAAGCTATTGCTTCATCAACTA 376665 >seq20112 Length=807 Score = 100 bits (110), Expect = 6e-19 Identities = 110/147 (75%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | | ||| |||| ||||||| || || ||||||||| ||||| ||| |||||| Sbjct 425 GCTCCGTTAGGCTTTCGCCCATTGCAGAAAATTTCCCACTGCTACCTCCGGTAAGAGTCT 484 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||||||| || | ||| |||||| | | |||| ||| Sbjct 485 GGGCCTTGTCTCAGTCCCAATGTCGCTGATCATCCTCTC------GAACCTGATCATCGC 538 Query 127 CTTGGTGGGCTATTATCTCACCAACTA 153 |||||| |||||| ||| |||||| Sbjct 539 CTTGGTAAGCTATTGCTTCATCAACTA 565 >seq3592 Length=5743183 Score = 95.1 bits (104), Expect = 2e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 33 CAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 ||| || |||||||| ||||||||||||||||||||||| |||||||| ||| |||||| Sbjct 2032845 CAAAATTCCCCACTGTTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAGATCCAGTGTGGC 2032904 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGA 119 | ||| |||||| | || ||||| || Sbjct 2032905 TGATCATCCTCTCGGACCAGCTACTGA 2032931 >seq4230 Length=96375 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 53 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGG 112 |||| ||||||| ||||| | ||||||||| ||||||| | ||| ||||||| || | Sbjct 94560 TCCCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGATCATCCTCTCAAACCAG 94501 Query 113 CTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172 | | ||| || ||| | ||||| ||||||||||| ||||| | ||||||||| Sbjct 94500 CAATTAATCATCAGCTCAATAAACTATTGCCTCACCAACTAGTTAATCAGACGCGAGCCC 94441 Query 173 ATCTTTCAGCG 183 || | |||| Sbjct 94440 CTCCTCGAGCG 94430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998144409600