Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3496 221 3e-55 seq6409 183 7e-44 seq3682 172 1e-40 seq23728 138 3e-30 seq3592 118 3e-24 >seq3496 Length=200309 Score = 221 bits (244), Expect = 3e-55 Identities = 296/410 (72%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | ||| |||| |||||||| Sbjct 182112 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTTTCGCCCATT 182171 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| | |||||||||| ||| ||| Sbjct 182172 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCGGTGTCTCAGTCCCAATGT 182231 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||| ||||| |||| |||||| || | ||| || | ||| Sbjct 182232 GGCTGATCATCCTCTCGGACTAGCTACTGATCATCGCCTTGGCAAGTTATTGCCTCACCA 182291 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | || | | ||| || | || | |||| Sbjct 182292 ACTAGCTAATCAGACGCGAGCCCCTC--TTCG-----GGC----AGATTCCTCCTTTTGC 182340 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 182341 TCCTCAGTC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 182398 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||| || |||||| ||| || || |||| Sbjct 182399 GGTTCTAACGCGTTACTCACCCATCTGCCACT------GGAAACACCA-----CTTC--- 182444 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || |||| |||||||||| ||||| Sbjct 182445 ---CCGTCCGACTTGCATGTGTTAAGCATGCCACCAGCGTTCATCCTGAG 182491 >seq6409 Length=3949 Score = 183 bits (202), Expect = 7e-44 Identities = 128/146 (88%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 67 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 126 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 127 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 186 Query 125 GGCTGGTCATCCTCTCAGACCAGCTA 150 ||||| |||||||||| ||||||||| Sbjct 187 GGCTGATCATCCTCTCGGACCAGCTA 212 Score = 104 bits (114), Expect = 6e-20 Identities = 115/154 (75%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| |||||||||||| ||| | ||||||| ||||| ||| | | |||| Sbjct 249 GGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 308 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||| ||||||| ||| || || |||| ||||||||||||| Sbjct 309 TCACCCGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTCGACTTGC 351 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| || ||||||||||||||| ||||| Sbjct 352 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 385 >seq3682 Length=3594047 Score = 172 bits (190), Expect = 1e-40 Identities = 145/178 (81%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||||||| | ||| |||| | ||| | |||||||| |||||||| | || |||||| Sbjct 3524940 GGCCTTCTTCCTTCACACGGCTTTGCTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCC 3524881 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||||| || |||||||| |||||| | ||||||||||| |||||||||||| ||||||| Sbjct 3524880 CACTGTTGTCTCCCGTAAGAGTCTAGGTCGTGTCTCAGTCCCAGTGTGGCTGATCATCCT 3524821 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 || |||||||| |||| |||||| ||| || |||||| | ||||||| |||||| Sbjct 3524820 CTAGGACCAGCTTCTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAACTAATC 3524763 >seq23728 Length=2977665 Score = 138 bits (152), Expect = 3e-30 Identities = 119/148 (80%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 28 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 87 || ||||| |||| ||| | |||||||| ||||||||| | || ||| ||||||||| || Sbjct 394963 ATCCACGCAGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTTCCCACTGCTACC 394904 Query 88 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 |||||||||||||||| || ||||||||| ||| |||||||| |||||||||| |||| Sbjct 394903 TCCCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCGGACC-- 394846 Query 148 CTAGGGATCGTCGCCTAGGTGGGCCATT 175 |||| |||||| ||| || ||| Sbjct 394845 ----TGATCATCGCCTTGGTAAGCTATT 394822 Score = 132 bits (146), Expect = 1e-28 Identities = 127/163 (78%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 28 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 87 || ||||| |||| ||| | ||| |||| || |||||| | || ||| |||||||||||| Sbjct 376819 ATCCACGCAGCATTGCTCCGTCAAGCTTTCGTCCATTGCGGAAAATTTCCCACTGCTGCC 376760 Query 88 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 |||||||||||||||| || ||||||||| ||| |||||||| |||||||||| |||| Sbjct 376759 TCCCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCGGACC-- 376702 Query 148 CTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||| |||||| | | || ||| | | |||||||| Sbjct 376701 ----TGATCATCGCCTTGATAAGCTATTGCTTCATCAACTAGC 376663 >seq3592 Length=5743183 Score = 118 bits (130), Expect = 3e-24 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||| ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| Sbjct 2032845 CAAAATTCCCCACTGTTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAGATCCAGTGTGGC 2032904 Query 128 TGGTCATCCTCTCAGACCAGCTA 150 || |||||||||| ||||||||| Sbjct 2032905 TGATCATCCTCTCGGACCAGCTA 2032927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222087065600