Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3496 297 6e-78 seq3682 244 3e-62 seq6409 192 2e-46 seq23728 145 2e-32 seq20112 118 3e-24 seq25385 111 5e-22 seq12493 111 5e-22 seq3592 100 9e-19 seq4230 77.0 1e-11 >seq3496 Length=200309 Score = 297 bits (328), Expect = 6e-78 Identities = 273/343 (80%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || ||| ||||||||| |||||||||| Sbjct 182309 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAACTTGCCAAGGCGATGATCAGTAGCTAGT 182250 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||||||| |||||||||| | ||| ||||||||||||||||| Sbjct 182249 CCGAGAGGATGATCAGCCACATTGGGACTGAGACACCGCCCAGACTCCTACGGGAGGCAG 182190 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||| ||| | ||||| |||||||| | || Sbjct 182189 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCTTGACGGAGCAATGCCGCGTGGAGGTAGA 182130 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| | ||| Sbjct 182129 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCGGGGGAAT 182070 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| | || |||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 182069 AAGCATCCGCAAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 182010 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 182009 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 181968 >seq3682 Length=3594047 Score = 244 bits (270), Expect = 3e-62 Identities = 263/343 (77%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||| |||||||| |||||| |||||||||||||| |||||| ||| | Sbjct 3524756 CGCGTCTGATTAGTTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGAAGCTGGT 3524815 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| |||||| ||| ||||||||||| | | |||| |||||||| || Sbjct 3524816 CCTAGAGGATGATCAGCCACACTGGGACTGAGACACGACCTAGACTCTTACGGGAGACAA 3524875 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||||||||||||| | ||||| |||| |||| || || Sbjct 3524876 CAGTGGGGAATTTTCCGCAATGGGCAAAAGCCTGACGGAGCAAAGCCGTGTGAAGGAAGA 3524935 Query 340 AGGCCTTCGGGT-CGTAAAGCTCTGTCCTCA-AGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| || | | | || | ||| | | |||| ||||||| || ||| ||| Sbjct 3524936 AGGCCCATGGTTATGAACTTCTTTTTCCGGAGAAGAAG-CAATGACGATATTTGGGGAAT 3524994 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| | ||||| | ||||||| || |||||||||| ||| || ||||||||||| Sbjct 3524995 AAGCATCAGCTAAATCTGTGCCAGTAGTCGCGGTAATATAGAGGATGCAAGCGTTATCCG 3525054 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | || |||||| || |||||||| || ||||||| Sbjct 3525055 AAATGA-TTAGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 3525096 >seq6409 Length=3949 Score = 192 bits (212), Expect = 2e-46 Identities = 172/215 (80%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 209 CAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCT 268 || |||| | | |||||| ||||| |||||| ||| |||||||||||| ||| |||||| Sbjct 215 CANTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCT 156 Query 269 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGC 328 |||||||||||||||||||||| || | |||||||| ||||||||| | ||||| ||||| Sbjct 155 ACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGC 96 Query 329 GTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGT 386 ||| | |||||||| |||||||| || ||| | ||| |||| | ||||||||| Sbjct 95 GTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGT 36 Query 387 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG 421 | |||||| |||| ||||||||| ||||||| Sbjct 35 ATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAG 1 >seq23728 Length=2977665 Score = 145 bits (160), Expect = 2e-32 Identities = 129/160 (81%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 172 GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGA 231 ||||||| | | | || |||||||||||||| |||||| | || |||||| ||| Sbjct 394807 GCTAGTTAATGAAGCAATAGCTTACCAAGGCGATGATCAG-----GTCC-GAGAGGATGA 394860 Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291 || |||||||||| ||||||||| || ||| |||||||||||||| ||||||||| ||| Sbjct 394861 TCAGCCACATTGGGACTGAGACAAGGCCCAGACTCCTACGGGAGGTAGCAGTGGGAAATT 394920 Query 292 TTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 || | |||||||| ||||||||| | ||||| || ||||| Sbjct 394921 TTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCTGCGTG 394960 Score = 141 bits (156), Expect = 3e-31 Identities = 128/160 (80%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 172 GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGA 231 |||||||| | | | || ||||| |||||||| |||||| | || |||||| ||| Sbjct 376663 GCTAGTTGATGAAGCAATAGCTTATCAAGGCGATGATCAG-----GTCC-GAGAGGATGA 376716 Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291 || |||||||||| ||||||||| || ||| |||||||||||||||||||||||| ||| Sbjct 376717 TCAGCCACATTGGGACTGAGACAAGGCCCAGACTCCTACGGGAGGCAGCAGTGGGAAATT 376776 Query 292 TTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 || | |||||| | ||||| ||| | ||||| || ||||| Sbjct 376777 TTCCGCAATGGACGAAAGCTTGACGGAGCAATGCTGCGTG 376816 >seq20112 Length=807 Score = 118 bits (130), Expect = 3e-24 Identities = 122/160 (76%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 172 GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGA 231 |||||||| | | | || |||||||||||||| |||||| | |||||| ||| Sbjct 567 GCTAGTTGATGAAGCAATAGCTTACCAAGGCGATGATCAGGTTC------GAGAGGATGA 514 Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291 || || ||||||| ||||||||| || ||| |||| ||| ||||| ||||||||| ||| Sbjct 513 TCAGCGACATTGGGACTGAGACAAGGCCCAGACTCTTACCGGAGGTAGCAGTGGGAAATT 454 Query 292 TTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 || |||||||| ||||||| | | ||||| || || || Sbjct 453 TTCTGCAATGGGCGAAAGCCTAACGGAGCAATGCTGCTTG 414 >seq25385 Length=66151 Score = 111 bits (122), Expect = 5e-22 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| ||||||||||||| || ||||||||| ||| | || |||| | ||| |||||| Sbjct 23490 ACACGGCCCAAACTCCTACGAGAAGCAGCAGTGAGGAGTTTTTCACATTAGGCGAAAGCC 23431 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 || | ||||| | |||||| | |||||||| | || || || ||| | ||| | Sbjct 23430 CGACGGAGCAATGTCGCGTGGAGGTAGAAGGCCTGTGAGTTGTGAACTTCTTTTCTCGAA 23371 Query 372 GAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG 429 |||| ||||||| |||| | |||| |||| | |||||| ||| ||||||| | Sbjct 23370 GAAGTAGTAATGACAGTACCTAAGGAATAAGCATTGACTAACT--GTGTGAGCAGCCATG 23313 Query 430 GTAATACGTAGGGGGCTAGCGTTATCC 456 ||| ||| | || |||||||||| Sbjct 23312 GTATTACAGATTATGCAAGCGTTATCC 23286 >seq12493 Length=255693 Score = 111 bits (122), Expect = 5e-22 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| ||||||||||||| || ||||||||| ||| | || |||| | ||| |||||| Sbjct 255033 ACACGGCCCAAACTCCTACGAGAAGCAGCAGTGAGGAGTTTTTCACATTAGGCGAAAGCC 255092 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 || | ||||| | |||||| | |||||||| | || || || ||| | ||| | Sbjct 255093 CGACGGAGCAATGTCGCGTGGAGGTAGAAGGCCTGTGAGTTGTGAACTTCTTTTCTCGAA 255152 Query 372 GAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG 429 |||| ||||||| |||| | |||| |||| | |||||| ||| ||||||| | Sbjct 255153 GAAGTAGTAATGACAGTACCTAAGGAATAAGCATTGACTAACT--GTGTGAGCAGCCATG 255210 Query 430 GTAATACGTAGGGGGCTAGCGTTATCC 456 ||| ||| | || |||||||||| Sbjct 255211 GTATTACAGATTATGCAAGCGTTATCC 255237 >seq3592 Length=5743183 Score = 100 bits (110), Expect = 9e-19 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 208 TCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCC 267 |||||||| | | |||||| ||||| |||||| |||| |||||||| || ||| ||||| Sbjct 2032931 TCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGATCTGAGACATGGCCCAGACTCC 2032872 Query 268 TACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAA 307 ||||||||||| ||||||||||| ||| | || || |||| Sbjct 2032871 TACGGGAGGCAACAGTGGGGAATTTTG-AGAAAGGACAAA 2032833 >seq4230 Length=96375 Score = 77.0 bits (84), Expect = 1e-11 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||| ||||||||| ||| || | ||| || || ||| | | || | Sbjct 94446 CGCGTCTGATTAACTAGTTGGTGAGGCAATAGTTTATTGAGCTGATGATTAATTGCTGGT 94505 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274 ||||||| ||||| ||||||| | ||||||| | | ||||||||||| |||| Sbjct 94506 TTGAGAGGATGATCAACCACATTAGGACTGAGATGCAGCCCAAACTCCTAGGGGA 94560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497216614400