Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq6409 125 2e-26 seq3496 111 3e-22 seq23728 93.3 9e-17 seq3682 91.5 3e-16 seq3592 78.8 2e-12 >seq6409 Length=3949 Score = 125 bits (138), Expect = 2e-26 Identities = 161/223 (72%), Gaps = 18/223 (8%) Strand=Plus/Plus Query 6 CTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGGAAG 65 ||||||| |||||||||||||||||||| | || ||| || || Sbjct 1 CTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------TG---- 45 Query 66 GTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTT 125 ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| | | Sbjct 46 --TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGCGGCAT 102 Query 126 GGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTT 185 ||| |||| || ||| |||||| || ||||| |||||||||||||||||||||| Sbjct 103 TGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTC 162 Query 186 TGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| |||||||||||| ||| ||||| || | ||||||| || Sbjct 163 TGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 205 >seq3496 Length=200309 Score = 111 bits (122), Expect = 3e-22 Identities = 114/148 (77%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| ||| || Sbjct 182104 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTT 182162 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| | ||||||||| Sbjct 182163 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCGGTGTCTCAG 182222 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||||||||| || | ||||||| || Sbjct 182223 TCCCAATGTGGCTGATCATCCTCTCGGA 182250 >seq23728 Length=2977665 Score = 93.3 bits (102), Expect = 9e-17 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 || |||||||||| || ||| | |||||||||||||||||||||| ||| || ||||| Sbjct 376794 CTTTCGTCCATTGCGGAAAATTTCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCTTGTCT 376735 Query 198 CAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||| ||||||||| || | ||||||| || Sbjct 376734 CAGTCCCAATGTGGCTGATCATCCTCTCGGA 376704 Score = 87.8 bits (96), Expect = 4e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||| | ||||||| |||||||||||||| ||| || Sbjct 394943 TCAGGCTTTCGCCCATTGCGGAAAATTTCCCACTGCTACCTCCCGTAGGAGTCTGGGCCT 394884 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||||||||| || | ||||||| || Sbjct 394883 TGTCTCAGTCCCAATGTGGCTGATCATCCTCTCGGA 394848 >seq3682 Length=3594047 Score = 91.5 bits (100), Expect = 3e-16 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | || || | | ||||| |||||||| | ||| ||| |||| || Sbjct 3524960 AAAAGAAGTTCATAA-CCATGGG-CCTTCTTCCTTCACACGGCTTTGCTCCGTCAGGCTT 3524903 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| ||||| || |||||||| |||| | | |||||||||| Sbjct 3524902 TTGCCCATTGCGGAAAATTCCCCACTGTTGTCTCCCGTAAGAGTCTAGGTCGTGTCTCAG 3524843 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||| || | || ||| | | || ||| || || Sbjct 3524842 TCCCAGTGTGGCTGATCATCCTCTAGGACCAGCTTCTGATCATCGCCTTGGTAAGCTATT 3524783 Query 261 ACCCCGCCTACTACCTAAT 279 ||| | || |||| ||||| Sbjct 3524782 ACCTCACCAACTAACTAAT 3524764 >seq3592 Length=5743183 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 153 CAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGG 212 ||| ||||| ||||| |||||||||||||||| ||| || |||||||| |||| ||||| Sbjct 2032845 CAAAATTCCCCACTGTTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAGATCCAGTGTGGC 2032904 Query 213 GGACCTTCCTCTCAGA 228 || | ||||||| || Sbjct 2032905 TGATCATCCTCTCGGA 2032920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068526387200