Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq94380 399 3e-109
seq94462 396 4e-108
seq110664 167 4e-39
>seq94380
Length=2920
Score = 399 bits (442), Expect = 3e-109
Identities = 244/254 (96%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 2031 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2088
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2089 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAANTTTCAAAGATT 2148
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2149 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 2208
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2209 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAC 2268
Query 240 GGCCAT-CTCCCTC 252
|||||| ||||||
Sbjct 2269 GGCCATAGTCCCTC 2282
>seq94462
Length=1518
Score = 396 bits (438), Expect = 4e-108
Identities = 240/250 (96%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 7 AGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTT 66
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1 AGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTCGTT 58
Query 67 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGA 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGG 118
Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 178
Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT- 245
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 179 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATA 238
Query 246 CTCCCTCGAA 255
|||||| ||
Sbjct 239 GTCCCTCTAA 248
>seq110664
Length=1279
Score = 167 bits (184), Expect = 4e-39
Identities = 98/101 (97%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1180 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAANTTC 1238
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101
||||||||||||||||||||||||||||||||| |||||||
Sbjct 1239 CTCGTTGAAGACCAACAATTGCAATGATCTATCTCCATCAC 1279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751081055530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |