Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq94380 399 3e-109 seq94462 396 4e-108 seq110664 167 4e-39 >seq94380 Length=2920 Score = 399 bits (442), Expect = 3e-109 Identities = 244/254 (96%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 2031 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2088 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2089 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAANTTTCAAAGATT 2148 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2149 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 2208 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2209 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAC 2268 Query 240 GGCCAT-CTCCCTC 252 |||||| |||||| Sbjct 2269 GGCCATAGTCCCTC 2282 >seq94462 Length=1518 Score = 396 bits (438), Expect = 4e-108 Identities = 240/250 (96%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 7 AGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTT 66 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 1 AGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTCGTT 58 Query 67 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGA 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGG 118 Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 178 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT- 245 |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 179 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATA 238 Query 246 CTCCCTCGAA 255 |||||| || Sbjct 239 GTCCCTCTAA 248 >seq110664 Length=1279 Score = 167 bits (184), Expect = 4e-39 Identities = 98/101 (97%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1180 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAANTTC 1238 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1239 CTCGTTGAAGACCAACAATTGCAATGATCTATCTCCATCAC 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751081055530