Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq94380 235 2e-59
seq106596 230 1e-57
seq109924 228 3e-57
seq94390 223 1e-55
seq122756 134 6e-29
seq120652 93.3 2e-16
>seq94380
Length=2920
Score = 235 bits (260), Expect = 2e-59
Identities = 224/282 (79%), Gaps = 7/282 (2%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| ||
Sbjct 567 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 509
Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521
|||||||| | || || ||| ||| || || || ||| | ||||||||| |||
Sbjct 508 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 452
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581
|||| | |||| | | || || || |||| |||||| |||| ||||||||||||||
Sbjct 451 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 392
Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 391 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 332
Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 331 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 290
Score = 159 bits (176), Expect = 1e-36
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||||||||||||| | || ||| |||||||| | || || ||||||
Sbjct 950 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 891
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| ||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| |
Sbjct 890 TACGGGCGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAA 831
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| ||| || | ||||||||| | |||||||||
Sbjct 830 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 790
>seq106596
Length=1072
Score = 230 bits (254), Expect = 1e-57
Identities = 224/283 (79%), Gaps = 8/283 (3%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| ||
Sbjct 669 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 611
Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521
|||||||| | || || ||| ||| || || || ||| | ||||||||| |||
Sbjct 610 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 554
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC-TGTTGGGACCCGAAAGA 580
|||| | |||| | | || || || |||| |||||| | ||| |||||||||||||
Sbjct 553 CCGACCTTGATCTNCTGAGAAGGGTTCGAGTGTGAGCATGCCNTGTCGGGACCCGAAAGA 494
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 493 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 434
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 433 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 391
Score = 156 bits (172), Expect = 2e-35
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||||||||||||| | || ||| |||||||| | || || ||||||
Sbjct 1052 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 993
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| |
Sbjct 992 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 933
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| ||| || | ||||||||| | |||||||||
Sbjct 932 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 892
>seq109924
Length=1241
Score = 228 bits (252), Expect = 3e-57
Identities = 225/284 (79%), Gaps = 9/284 (3%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| ||
Sbjct 932 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 874
Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521
|||||||| | || || ||| ||| || || || ||| | ||||||||| |||
Sbjct 873 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 817
Query 522 CCGATCCT-GATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
|||| ||| ||| | | || || || |||| |||||| |||| |||||||||||||
Sbjct 816 CCGANCCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 757
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG-CAGCG 639
||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||
Sbjct 756 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGNCAGCG 697
Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 696 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 653
Score = 80.6 bits (88), Expect = 1e-12
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 113 CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAA 172
||||||| ||||||| | || ||||||||||||| |||||| ||||||||| ||| |
Sbjct 1241 CGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGA 1182
Query 173 GCACGTGAAATTGTTGAAAGGGAAGCG 199
| | ||||||||| | |||||||||
Sbjct 1181 GTGCTTGAAATTGTCGGGAGGGAAGCG 1155
>seq94390
Length=6339
Score = 223 bits (246), Expect = 1e-55
Identities = 224/284 (79%), Gaps = 9/284 (3%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| ||
Sbjct 86 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 144
Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521
|||||||| | || || ||| ||| || || || ||| | ||||||||| |||
Sbjct 145 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 201
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581
|||| | |||| | | || || || |||| |||||| |||| ||||||||||||||
Sbjct 202 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 261
Query 582 GGTGAACTATGCCTGAATAGGGTGAAG-CCAGAGGAAACTCTGGTGGAGGCTCG-CAGCG 639
|||||||||||||||| ||| |||| ||||||||||||||||||||||| || |||||
Sbjct 262 GGTGAACTATGCCTGAGCGGGGCGAAGNCCAGAGGAAACTCTGGTGGAGGCCCGACAGCG 321
Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 322 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 365
>seq122756
Length=870
Score = 134 bits (148), Expect = 6e-29
Identities = 109/132 (83%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||||||||||||| | || ||| |||||||| | || || ||||||
Sbjct 738 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 797
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| |
Sbjct 798 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 857
Query 159 AAGAGAGTTAAA 170
|||||||| |||
Sbjct 858 AAGAGAGTCAAA 869
>seq120652
Length=669
Score = 93.3 bits (102), Expect = 2e-16
Identities = 85/106 (80%), Gaps = 1/106 (1%)
Strand=Plus/Minus
Query 95 TAAATATTGGCCAGAGAC-CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
|||||| ||| |||||| ||||||| ||||||| | || ||||||||||||| |||
Sbjct 281 TAAATACGGGCGAGAGACTCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACT 222
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 221 TTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2077294254100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |