Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq94380 235 2e-59 seq106596 230 1e-57 seq109924 228 3e-57 seq94390 223 1e-55 seq122756 134 6e-29 seq120652 93.3 2e-16 >seq94380 Length=2920 Score = 235 bits (260), Expect = 2e-59 Identities = 224/282 (79%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 567 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 509 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||||||| | || || ||| ||| || || || ||| | ||||||||| ||| Sbjct 508 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 452 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || |||| |||||| |||| |||||||||||||| Sbjct 451 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 392 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 391 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 332 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 331 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 290 Score = 159 bits (176), Expect = 1e-36 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 950 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 891 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| | Sbjct 890 TACGGGCGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAA 831 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 830 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 790 >seq106596 Length=1072 Score = 230 bits (254), Expect = 1e-57 Identities = 224/283 (79%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 669 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 611 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||||||| | || || ||| ||| || || || ||| | ||||||||| ||| Sbjct 610 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 554 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC-TGTTGGGACCCGAAAGA 580 |||| | |||| | | || || || |||| |||||| | ||| ||||||||||||| Sbjct 553 CCGACCTTGATCTNCTGAGAAGGGTTCGAGTGTGAGCATGCCNTGTCGGGACCCGAAAGA 494 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 493 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 434 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 433 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 391 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 1052 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 993 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 992 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 933 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 932 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 892 >seq109924 Length=1241 Score = 228 bits (252), Expect = 3e-57 Identities = 225/284 (79%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 932 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 874 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||||||| | || || ||| ||| || || || ||| | ||||||||| ||| Sbjct 873 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 817 Query 522 CCGATCCT-GATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| ||| ||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 816 CCGANCCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 757 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG-CAGCG 639 ||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||| Sbjct 756 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGNCAGCG 697 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 696 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 653 Score = 80.6 bits (88), Expect = 1e-12 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 113 CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAA 172 ||||||| ||||||| | || ||||||||||||| |||||| ||||||||| ||| | Sbjct 1241 CGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGA 1182 Query 173 GCACGTGAAATTGTTGAAAGGGAAGCG 199 | | ||||||||| | ||||||||| Sbjct 1181 GTGCTTGAAATTGTCGGGAGGGAAGCG 1155 >seq94390 Length=6339 Score = 223 bits (246), Expect = 1e-55 Identities = 224/284 (79%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 86 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 144 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||||||| | || || ||| ||| || || || ||| | ||||||||| ||| Sbjct 145 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGA 201 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || |||| |||||| |||| |||||||||||||| Sbjct 202 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 261 Query 582 GGTGAACTATGCCTGAATAGGGTGAAG-CCAGAGGAAACTCTGGTGGAGGCTCG-CAGCG 639 |||||||||||||||| ||| |||| ||||||||||||||||||||||| || ||||| Sbjct 262 GGTGAACTATGCCTGAGCGGGGCGAAGNCCAGAGGAAACTCTGGTGGAGGCCCGACAGCG 321 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 322 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 365 >seq122756 Length=870 Score = 134 bits (148), Expect = 6e-29 Identities = 109/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 738 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 797 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 798 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 857 Query 159 AAGAGAGTTAAA 170 |||||||| ||| Sbjct 858 AAGAGAGTCAAA 869 >seq120652 Length=669 Score = 93.3 bits (102), Expect = 2e-16 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 95 TAAATATTGGCCAGAGAC-CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||| ||| |||||| ||||||| ||||||| | || ||||||||||||| ||| Sbjct 281 TAAATACGGGCGAGAGACTCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACT 222 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 221 TTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077294254100