Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq126054 269 7e-70 seq125583 251 2e-64 seq41702 118 3e-24 seq20497 107 5e-21 seq125685 80.6 7e-13 >seq126054 Length=4379 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 1818 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 1877 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1878 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1937 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 1938 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 1997 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 1998 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 2057 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 2058 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 2111 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 2112 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 2154 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 2155 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 2212 >seq125583 Length=1492 Score = 251 bits (278), Expect = 2e-64 Identities = 303/414 (73%), Gaps = 25/414 (6%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 911 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 970 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 971 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1030 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| | ||||| Sbjct 1031 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC--------AACTAAC 1082 Query 187 CC--CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 | | | || || |||| |||||||||||| |||| || |||||| || || | Sbjct 1083 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 1142 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304 || ||||||| ||||||||||||||||||||||| | |||||||| | | | | Sbjct 1143 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 1202 Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 | || | || || |||| ||||||||||||||||||| | Sbjct 1203 TAAG---AAAAAGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGT 1247 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 1248 CATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 1301 >seq41702 Length=4314 Score = 118 bits (130), Expect = 3e-24 Identities = 133/177 (75%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 103 ACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 ||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| Sbjct 1892 ACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCC 1833 Query 163 ATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCA 222 || | || || || | || | | || || |||| |||| ||||||| |||| Sbjct 1832 ATTCAAAGATT----ATAAC--ACTTCTCCTTTTGACTTTCCAGCACTGGGCAGGTGTCA 1779 Query 223 CACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | |||||| | | || | || ||||||| || |||| ||||||||||||||| Sbjct 1778 GAGTCTATACATTCTGTTACCACTTAGCAGAGTCCTCTGTTATTAATAAACAGTCGC 1722 >seq20497 Length=8765 Score = 107 bits (118), Expect = 5e-21 Identities = 200/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 || ||||||| || || || ||||||| ||| ||| ||| || ||| ||||| Sbjct 6069 TGTATCTTCATAGATATGTCTATTTCACCGAGCCTCTCTCTAAGATAGTGCCCAGATCGT 6128 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||| | || | ||| | ||||||||| ||||||| |||||| ||||| || || || Sbjct 6129 TACGTCTTTTTTACAGTTTGGAACTTACTCGACAAGTAATTTCACTACCGTAAAACTATT 6188 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC-GCGTTAGCTAACCCCA 190 || |||| | |||| ||| |||||||||||| | | ||| | || | | | | ||| Sbjct 6189 ATAGTTATGACCGCTGTTCACCGGGGCTTCGGTTACTGGCTCCTTTGTCATCGATCACCA 6248 Query 191 TC-AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || |||||||||||| | |||| ||| | |||| | ||| | |||| Sbjct 6249 ACTTCTTGACCTTCCGGCACTGAATAGGCATCAGCTCTCATACATGGTCTTATGACTTTG 6308 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||| ||||||||| ||||||| ||| |||| || || ||||| Sbjct 6309 TAGAGACTTGTGTTTTTGGTAAACAGCCGCCCGTGCCTAGTCACTACGACC 6359 >seq125685 Length=314 Score = 80.6 bits (88), Expect = 7e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 228 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 287 Query 73 ACGCCATTCGTGCAGGTCGGAACTTAC 99 ||||| ||||||| ||||||||||||| Sbjct 288 ACGCCTTTCGTGCGGGTCGGAACTTAC 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259209601664