Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq126054 269 7e-70
seq125583 251 2e-64
seq41702 118 3e-24
seq20497 107 5e-21
seq125685 80.6 7e-13
>seq126054
Length=4379
Score = 269 bits (298), Expect = 7e-70
Identities = 308/418 (74%), Gaps = 27/418 (6%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 1818 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 1877
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1937
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| |||||||||||| || ||| | | | || | |||
Sbjct 1938 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 1997
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 1998 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 2057
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 2058 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 2111
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | ||||||||||||||||||| || ||
Sbjct 2112 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 2154
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 2155 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 2212
>seq125583
Length=1492
Score = 251 bits (278), Expect = 2e-64
Identities = 303/414 (73%), Gaps = 25/414 (6%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 911 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 970
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 971 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1030
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||||||| || | ||| | |||||
Sbjct 1031 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC--------AACTAAC 1082
Query 187 CC--CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244
| | | || || |||| |||||||||||| |||| || |||||| || || |
Sbjct 1083 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 1142
Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304
|| ||||||| ||||||||||||||||||||||| | |||||||| | | | |
Sbjct 1143 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 1202
Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364
| || | || || |||| ||||||||||||||||||| |
Sbjct 1203 TAAG---AAAAAGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGT 1247
Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
| ||||||| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 1248 CATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 1301
>seq41702
Length=4314
Score = 118 bits (130), Expect = 3e-24
Identities = 133/177 (75%), Gaps = 6/177 (3%)
Strand=Plus/Minus
Query 103 ACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162
||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||
Sbjct 1892 ACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCC 1833
Query 163 ATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCA 222
|| | || || || | || | | || || |||| |||| ||||||| ||||
Sbjct 1832 ATTCAAAGATT----ATAAC--ACTTCTCCTTTTGACTTTCCAGCACTGGGCAGGTGTCA 1779
Query 223 CACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279
| |||||| | | || | || ||||||| || |||| |||||||||||||||
Sbjct 1778 GAGTCTATACATTCTGTTACCACTTAGCAGAGTCCTCTGTTATTAATAAACAGTCGC 1722
>seq20497
Length=8765
Score = 107 bits (118), Expect = 5e-21
Identities = 200/291 (69%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
|| ||||||| || || || ||||||| ||| ||| ||| || ||| |||||
Sbjct 6069 TGTATCTTCATAGATATGTCTATTTCACCGAGCCTCTCTCTAAGATAGTGCCCAGATCGT 6128
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
|||| | || | ||| | ||||||||| ||||||| |||||| ||||| || || ||
Sbjct 6129 TACGTCTTTTTTACAGTTTGGAACTTACTCGACAAGTAATTTCACTACCGTAAAACTATT 6188
Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC-GCGTTAGCTAACCCCA 190
|| |||| | |||| ||| |||||||||||| | | ||| | || | | | | |||
Sbjct 6189 ATAGTTATGACCGCTGTTCACCGGGGCTTCGGTTACTGGCTCCTTTGTCATCGATCACCA 6248
Query 191 TC-AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249
| || |||||||||||| | |||| ||| | |||| | ||| | ||||
Sbjct 6249 ACTTCTTGACCTTCCGGCACTGAATAGGCATCAGCTCTCATACATGGTCTTATGACTTTG 6308
Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|||| ||||||||| ||||||| ||| |||| || || |||||
Sbjct 6309 TAGAGACTTGTGTTTTTGGTAAACAGCCGCCCGTGCCTAGTCACTACGACC 6359
>seq125685
Length=314
Score = 80.6 bits (88), Expect = 7e-13
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 228 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 287
Query 73 ACGCCATTCGTGCAGGTCGGAACTTAC 99
||||| ||||||| |||||||||||||
Sbjct 288 ACGCCTTTCGTGCGGGTCGGAACTTAC 314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1259209601664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |