Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq113845 408 7e-112 seq109912 396 5e-108 seq94390 394 2e-107 seq104575 358 1e-96 seq118598 331 2e-88 seq112543 224 2e-56 seq16939 223 6e-56 seq104831 185 1e-44 seq89541 161 2e-37 seq27074 134 2e-29 seq7325 78.8 2e-12 seq23517 73.4 7e-11 >seq113845 Length=1328 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| ||| | || | ||||||||||||||||||||||||||||||| Sbjct 949 TACTAGGTTGAATTACTATTACGACG-CTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1007 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1008 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1067 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1127 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1128 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1187 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 1188 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 1240 >seq109912 Length=1363 Score = 396 bits (438), Expect = 5e-108 Identities = 257/281 (91%), Gaps = 1/281 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| ||| | || | ||||||||||||||||||||||||||||||| Sbjct 1082 TACTAGGTTGAATTACTATTACGACG-CTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1140 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1141 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1200 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1260 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1261 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1320 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 |||||| ||| || |||||||||||||||||||| |||||| Sbjct 1321 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCA 1361 >seq94390 Length=6339 Score = 394 bits (436), Expect = 2e-107 Identities = 267/296 (90%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGT--CT 58 ||||| | ||||||| ||| | || | ||||||||||||||||||||||||||| || Sbjct 2485 TACTAGGTTGAATTACTATTACGACG-CTGTCATCAGTAGGGTAAAACTAACCTGTNNCT 2427 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 2426 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGT 2367 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG-CAACGTCGC 177 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2366 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGNCAACGTCGC 2307 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2306 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAG 2247 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 2246 CTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 2191 >seq104575 Length=1274 Score = 358 bits (396), Expect = 1e-96 Identities = 231/253 (91%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 618 GGTAAAACTAACCTGTCTCACAACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTG 677 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 ||||||||||| ||| |||||||||||| ||||||| ||||||| ||||||||||| Sbjct 678 AACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGAAAGAGCCAACATCGAAGGA 737 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 738 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCTAGTTATCCCTATGGTAAC 797 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||| |||||||||| ||||||| ||| || |||||||||||||||||||| ||||| Sbjct 798 TTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTC 857 Query 281 ATGGTTTGTATTC 293 | |||| |||||| Sbjct 858 ACGGTTCGTATTC 870 >seq118598 Length=892 Score = 331 bits (366), Expect = 2e-88 Identities = 252/295 (85%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| ||| | || | ||||||||||||||||||||||||| | ||| Sbjct 544 TACTAAGTTGAATTACTATTACGACG-CTGTCATCAGTAGGGTAAAACTAACCTATTTCA 602 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||| || ||| ||||| |||| ||| ||||||||||||| ||| || Sbjct 603 CGACGGTCTAAACCTAGATCATGTTCCTTATTGGTGCTTGAACAATCCAACACTTGGTGA 662 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC-AAAAAGCAACGTCGCTA 179 |||||||||| ||||||||||||||||||||||||||||| ||||||||| || |||| Sbjct 663 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCNAAAAAGCAATGTTGCTA 722 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||| |||||||| | ||||| || || |||||||| | Sbjct 723 TGAACGCTTGGCTGCCACAAGCCAATTATCCCTATAGTAACCCTTTTGACACCTCTAACT 782 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| || || |||||||||||||||||||| ||||||||||| ||||||| Sbjct 783 TCAAATTCTGAAGGTCTAAAGGATCGATAGGCCACGCTTTCATGGTTCGTATTCA 837 >seq112543 Length=744 Score = 224 bits (248), Expect = 2e-56 Identities = 156/176 (89%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| ||| | || | ||||||||||||||||||||||||||||||| Sbjct 400 TACTAGGTTGAATTACTATTACGACG-CTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 458 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||| |||||||||| |||||||||||||||||| ||| || Sbjct 459 CGACGGTCTAAACCCAGCTCANGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 518 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 519 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGTCG 574 >seq16939 Length=262 Score = 223 bits (246), Expect = 6e-56 Identities = 146/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 4 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGTTGCTATGAACGCTTGGCTG 63 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||||||| |||||||| ||||||| ||| || |||||||| | ||||||| || || Sbjct 64 CCACAAGCCAATTATCCCTATGGTAACCTTTTTGACACCTCTAACTTCAAATTCTGAAGG 123 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||||||||||||||||| ||||||||||| ||||||| Sbjct 124 TCTAAAGGATCGATAGGCCACGCTTTCATGGTTCGTATTCA 164 >seq104831 Length=1371 Score = 185 bits (204), Expect = 1e-44 Identities = 156/183 (85%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTA-GGGT-AAAACTAA--CCTGT 56 ||||| | ||||||| ||| | || | |||||||||| |||| |||||||| ||||| Sbjct 775 TACTAGGTTGAATTACTATTACGACG-CTGTCATCAGTANGGGTNAAAACTAANNCCTGT 833 Query 57 CTCATGACGGTCTAAA-CCCAGCTCACGTTCCCTATTAGTGGGTGAAC-AATCCAACGCT 114 |||| ||||||||||| ||||||||| |||||||||| |||||||||| |||||||| || Sbjct 834 CTCACGACGGTCTAAANCCCAGCTCATGTTCCCTATTGGTGGGTGAACNAATCCAACACT 893 Query 115 TACCG-AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG 173 | | ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 894 TGGTGNAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATG 953 Query 174 TCG 176 ||| Sbjct 954 TCG 956 >seq89541 Length=2327 Score = 161 bits (178), Expect = 2e-37 Identities = 180/240 (75%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 |||||| |||| | ||||| | ||| ||||| ||| | || | ||||||||| ||| Sbjct 1811 GTAAAATTAACGTACCTCATAATGGTTTAAACGGAGCCC---TTTCATATTAGTGGTTGA 1867 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||| ||| ||| ||||||| ||| | | ||| ||||||| ||||| |||||| Sbjct 1868 ACAACTCAAAATTTAGTGAATTCTACTTGACAACGGTAGAAAGAGCCAACATCNAAGGAT 1927 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 ||||| ||| ||| |||| || ||||||||| ||||| || |||| ||| ||||||| Sbjct 1928 TAAAAAACAATGTCACTATAAAAGCTTGGCTGTCACAATTCAATTATTCCTATGGTAACA 1987 Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 ||| || |||||||||| ||||| || || | ||| | | || || ||||||| ||||| Sbjct 1988 TTTTTGACACCTCTAGCTTCAAAATTTGAAAGTCTAGAAGTTCAATTGGCCACAGTTTCA 2047 >seq27074 Length=2008 Score = 134 bits (148), Expect = 2e-29 Identities = 98/114 (86%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| |||||||||||||||||| ||||||| |||||||||||||||| |||||||| | Sbjct 1094 TGAATGCTTGGCTGCCACAAGCCTGTTATCCTTGTGGTAACTTTTCTGACACCTCTAACT 1035 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| || | |||||||| ||||||||| ||||||||||| |||||| Sbjct 1034 TCAAATTCTGAATGTTTAAAGGATTGATAGGCCATGCTTTCATGGTTCGTATTC 981 >seq7325 Length=2219 Score = 78.8 bits (86), Expect = 2e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACA 275 |||| ||||||| |||||||| | ||||||| | | || ||| ||||||||||||||| Sbjct 2059 GTAATTTTTCTGACACCTCTAACTTCAAATTCCAAAGGTCTAGAGGATCGATAGGCCATG 2000 Query 276 CTTTCATGGTTTGTATTC 293 |||||| | ||| ||||| Sbjct 1999 CTTTCACGATTTATATTC 1982 >seq23517 Length=1653 Score = 73.4 bits (80), Expect = 7e-11 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||||||||||||||||||||||||||||||||| |||| Sbjct 4 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGTCG 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853322242752