Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq126055 226 6e-57 seq11908 226 6e-57 seq125562 203 7e-50 seq6532 203 7e-50 seq61060 152 1e-34 seq124151 140 7e-31 seq94409 105 1e-20 seq78974 98.7 2e-18 seq68534 96.9 7e-18 seq67386 91.5 3e-16 seq696 89.7 1e-15 >seq126055 Length=3997 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 3000 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 3058 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 3059 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 3118 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 3119 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 3178 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 3179 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 3224 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 3225 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 3282 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 3283 GTCCGCCACT 3292 >seq11908 Length=925 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 855 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 797 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 796 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 737 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 736 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 677 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 676 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 631 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 630 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 573 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 572 GTCCGCCACT 563 >seq125562 Length=1343 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| ||||| |||| ||||||| ||||||||| Sbjct 801 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCGGGCTTTCGC 858 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 859 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 918 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 919 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 978 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 979 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 1018 >seq6532 Length=3813 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| ||||| |||| ||||||| ||||||||| Sbjct 1602 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCGGGCTTTCGC 1659 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 1660 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 1719 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 1720 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 1779 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 1780 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 1819 >seq61060 Length=4190 Score = 152 bits (168), Expect = 1e-34 Identities = 134/166 (81%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||||||| || |||||||| | |||||| | || ||||||||||||| |||| Sbjct 2452 CACGCGGCATTA-CTCCTTCAGGCTTCCTTCCATTGCCAAAAATTCCCCACTGCTACCTC 2394 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| ||||||| ||| ||| |||| || ||||| ||| ||||| | Sbjct 2393 CCATAGGAGTCTGGGTCGTGTCTTAGTCCCAATGTGGCTAATCATTTTCTTGGACCAACT 2334 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || |||| ||||||| || ||| ||| ||||||||||||||||||| Sbjct 2333 ACTGATCATCGCCTTAGTAAGCTATTGCCTCACCAACTAGCTAATC 2288 >seq124151 Length=1160 Score = 140 bits (154), Expect = 7e-31 Identities = 96/107 (90%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 13 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 71 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 |||||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 72 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 118 >seq94409 Length=18158 Score = 105 bits (116), Expect = 1e-20 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 97 GTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCG 156 ||| || |||||||||||| |||||||| |||||||||| ||||||| || | ||| Sbjct 1 GTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCA 60 Query 157 TCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216 | | |||||| |||| |||||| |||||||| ||||| | || ||||||||| | ||| Sbjct 61 TTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGC 120 Query 217 G 217 | Sbjct 121 G 121 >seq78974 Length=7354 Score = 98.7 bits (108), Expect = 2e-18 Identities = 129/177 (73%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77 || |||| ||||| |||||| || |||| ||||||| |||| || ||||||| Sbjct 6900 CTACTTTTACACA----GCATTG-CTCTGTCAGACTTTCGCATATTGCAAAAAATTCCCC 6846 Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137 | | || ||| ||| |||| | | | |||||||| || |||||| ||||||||| | Sbjct 6845 ATTACTATCTCTTGTAAGAGTTTAGGCTGTGTCTCAATTTTAGTGTGGTTGATCATCCCC 6786 Query 138 TCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || ||||| ||| ||| | |||||| | | ||| |||||| |||||||||||| Sbjct 6785 TCGAACCAGCTACTGATAATTTTCTTGGTAAACTATTGCCTCACTAACTAGCTAATC 6729 >seq68534 Length=4580 Score = 96.9 bits (106), Expect = 7e-18 Identities = 122/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 30 ACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCC 89 || |||||||| || || | ||||| || | ||| || ||| || ||| | ||| | Sbjct 638 ACACGGCATTG-CTCAATTATGCTTTTGCTTACTGTGAAAAATTTCCTACTTTTACCTAC 580 Query 90 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 | |||||||||| || |||||||||| |||||| | ||||||||||| ||||| | Sbjct 579 CATAGGAGTCTGTACAGTGTCTCAGTCTTAGTGTGGTTAATCATCCTCTC-GACCAACAA 521 Query 150 CGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | | || | |||||||| | | |||||||||| || || ||||| Sbjct 520 CTG-TCATTGCCTTGGTAATCTATTACCTCACTAATTAACTAAT 478 >seq67386 Length=7403 Score = 91.5 bits (100), Expect = 3e-16 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 49 AGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTG 108 ||||||| |||||||| || |||||||||| | || |||||||||| ||| | || Sbjct 3468 AGGCTTTTGCCCATTGCGGAAAATTCCCCACTATTATCTTCCGTAGGAGTTTGGGTCATG 3409 Query 109 TCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGA 168 ||| ||| | | ||| |||||||||||||| ||||| ||| || | || ||| | Sbjct 3408 TCTTAGTCCTAATGTTGCTGATCATCCTCTCGGACCAACTACTGAACATCATCTT--ATA 3351 Query 169 GCCATTACCTCACCAACTAGCTAATCCGA 197 | ||| || ||||||||| ||||| || Sbjct 3350 ACTATTGCCATACCAACTAGTTAATCAGA 3322 >seq696 Length=9752 Score = 89.7 bits (98), Expect = 1e-15 Identities = 88/114 (77%), Gaps = 10/114 (9%) Strand=Plus/Minus Query 81 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCA 140 ||||||||| ||||||||| | ||| || |||||| ||||||||||||| | Sbjct 4449 GCTGCCTCCAATAGGAGTCTAG-----GTCCCA-----AGTGTGGCTGATCATCCTCTAA 4400 Query 141 GACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||||||||||| ||| || ||||||| || ||| ||| |||||||| ||| || Sbjct 4399 GACCAGTTACGAATCATCACCTTGGTAAGTTATTGCCTTACCAACTAACTATTC 4346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070647757760