Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq126055 226 6e-57
seq11908 226 6e-57
seq125562 203 7e-50
seq6532 203 7e-50
seq61060 152 1e-34
seq124151 140 7e-31
seq94409 105 1e-20
seq78974 98.7 2e-18
seq68534 96.9 7e-18
seq67386 91.5 3e-16
seq696 89.7 1e-15
>seq126055
Length=3997
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 3000 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 3058
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 3059 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 3118
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 3119 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 3178
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 3179 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 3224
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 3225 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 3282
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 3283 GTCCGCCACT 3292
>seq11908
Length=925
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 855 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 797
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 796 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 737
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 736 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 677
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 676 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 631
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 630 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 573
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 572 GTCCGCCACT 563
>seq125562
Length=1343
Score = 203 bits (224), Expect = 7e-50
Identities = 179/220 (81%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| ||||| |||| ||||||| |||||||||
Sbjct 801 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCGGGCTTTCGC 858
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 859 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 918
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 919 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 978
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 979 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 1018
>seq6532
Length=3813
Score = 203 bits (224), Expect = 7e-50
Identities = 179/220 (81%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| ||||| |||| ||||||| |||||||||
Sbjct 1602 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCGGGCTTTCGC 1659
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 1660 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 1719
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 1720 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 1779
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 1780 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 1819
>seq61060
Length=4190
Score = 152 bits (168), Expect = 1e-34
Identities = 134/166 (81%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||||||||||| || |||||||| | |||||| | || ||||||||||||| ||||
Sbjct 2452 CACGCGGCATTA-CTCCTTCAGGCTTCCTTCCATTGCCAAAAATTCCCCACTGCTACCTC 2394
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|| ||||||||||| ||||||| ||| ||| |||| || ||||| ||| ||||| |
Sbjct 2393 CCATAGGAGTCTGGGTCGTGTCTTAGTCCCAATGTGGCTAATCATTTTCTTGGACCAACT 2334
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
|| |||| ||||||| || ||| ||| |||||||||||||||||||
Sbjct 2333 ACTGATCATCGCCTTAGTAAGCTATTGCCTCACCAACTAGCTAATC 2288
>seq124151
Length=1160
Score = 140 bits (154), Expect = 7e-31
Identities = 96/107 (90%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 13 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 71
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135
|||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 72 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 118
>seq94409
Length=18158
Score = 105 bits (116), Expect = 1e-20
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 97 GTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCG 156
||| || |||||||||||| |||||||| |||||||||| ||||||| || | |||
Sbjct 1 GTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCA 60
Query 157 TCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216
| | |||||| |||| |||||| |||||||| ||||| | || ||||||||| | |||
Sbjct 61 TTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGC 120
Query 217 G 217
|
Sbjct 121 G 121
>seq78974
Length=7354
Score = 98.7 bits (108), Expect = 2e-18
Identities = 129/177 (73%), Gaps = 5/177 (3%)
Strand=Plus/Minus
Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77
|| |||| ||||| |||||| || |||| ||||||| |||| || |||||||
Sbjct 6900 CTACTTTTACACA----GCATTG-CTCTGTCAGACTTTCGCATATTGCAAAAAATTCCCC 6846
Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137
| | || ||| ||| |||| | | | |||||||| || |||||| ||||||||| |
Sbjct 6845 ATTACTATCTCTTGTAAGAGTTTAGGCTGTGTCTCAATTTTAGTGTGGTTGATCATCCCC 6786
Query 138 TCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
|| ||||| ||| ||| | |||||| | | ||| |||||| ||||||||||||
Sbjct 6785 TCGAACCAGCTACTGATAATTTTCTTGGTAAACTATTGCCTCACTAACTAGCTAATC 6729
>seq68534
Length=4580
Score = 96.9 bits (106), Expect = 7e-18
Identities = 122/164 (74%), Gaps = 3/164 (2%)
Strand=Plus/Minus
Query 30 ACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCC 89
|| |||||||| || || | ||||| || | ||| || ||| || ||| | ||| |
Sbjct 638 ACACGGCATTG-CTCAATTATGCTTTTGCTTACTGTGAAAAATTTCCTACTTTTACCTAC 580
Query 90 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149
| |||||||||| || |||||||||| |||||| | ||||||||||| ||||| |
Sbjct 579 CATAGGAGTCTGTACAGTGTCTCAGTCTTAGTGTGGTTAATCATCCTCTC-GACCAACAA 521
Query 150 CGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
| | || | |||||||| | | |||||||||| || || |||||
Sbjct 520 CTG-TCATTGCCTTGGTAATCTATTACCTCACTAATTAACTAAT 478
>seq67386
Length=7403
Score = 91.5 bits (100), Expect = 3e-16
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 49 AGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTG 108
||||||| |||||||| || |||||||||| | || |||||||||| ||| | ||
Sbjct 3468 AGGCTTTTGCCCATTGCGGAAAATTCCCCACTATTATCTTCCGTAGGAGTTTGGGTCATG 3409
Query 109 TCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGA 168
||| ||| | | ||| |||||||||||||| ||||| ||| || | || ||| |
Sbjct 3408 TCTTAGTCCTAATGTTGCTGATCATCCTCTCGGACCAACTACTGAACATCATCTT--ATA 3351
Query 169 GCCATTACCTCACCAACTAGCTAATCCGA 197
| ||| || ||||||||| ||||| ||
Sbjct 3350 ACTATTGCCATACCAACTAGTTAATCAGA 3322
>seq696
Length=9752
Score = 89.7 bits (98), Expect = 1e-15
Identities = 88/114 (77%), Gaps = 10/114 (9%)
Strand=Plus/Minus
Query 81 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCA 140
||||||||| ||||||||| | ||| || |||||| ||||||||||||| |
Sbjct 4449 GCTGCCTCCAATAGGAGTCTAG-----GTCCCA-----AGTGTGGCTGATCATCCTCTAA 4400
Query 141 GACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
||||||||||| ||| || ||||||| || ||| ||| |||||||| ||| ||
Sbjct 4399 GACCAGTTACGAATCATCACCTTGGTAAGTTATTGCCTTACCAACTAACTATTC 4346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1070647757760
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