Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq126054 259 2e-66 seq125563 167 8e-39 seq125584 161 4e-37 seq20497 75.2 4e-11 >seq126054 Length=4379 Score = 259 bits (286), Expect = 2e-66 Identities = 344/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 3021 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 3080 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 3081 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 3140 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 3141 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 3200 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 3201 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 3253 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 3254 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 3307 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 3308 GCC--GTGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 3360 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 3361 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 3420 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 3421 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 3470 >seq125563 Length=484 Score = 167 bits (184), Expect = 8e-39 Identities = 217/294 (74%), Gaps = 16/294 (5%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 148 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 207 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 208 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 267 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 268 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 327 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 328 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 380 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA 423 || || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 381 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA 432 >seq125584 Length=1735 Score = 161 bits (178), Expect = 4e-37 Identities = 344/499 (69%), Gaps = 26/499 (5%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 631 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 690 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 691 AATCGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 750 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 751 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 810 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 811 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 869 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383 |||| || || | | | || |||| || | || |||| || | | || Sbjct 870 ----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCAT 921 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-CTAAAAGGC 440 | ||||| | | ||| | ||||||| ||||||| | || || | || Sbjct 922 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCT-----TG 973 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCA 498 ||| | || |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 974 ACTACTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAAT 1033 Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 |||| ||||||||||||||||||||||||| | |||||||||||| |||| || || Sbjct 1034 AGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCATTGAGGAATACTT 1093 Query 559 AGGCTTAACGGGTGGTCCC 577 ||||||| |||||||||| Sbjct 1094 AGGCTTAGAGGGTGGTCCC 1112 >seq20497 Length=8765 Score = 75.2 bits (82), Expect = 4e-11 Identities = 115/163 (71%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| || ||||| ||||||||| ||||| | | | |||||| |||| |||||||| || Sbjct 7268 CCTCAACACATTTTGGGGAGAACTAGCTAGCTCTAGGTTTGAATGGCATTTCACCC-TAG 7326 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||| | | || | || | | ||||| | ||| ||||| | |||| | || | ||| Sbjct 7327 CCATAACTTATACGCTAATTCTTCAATATCAGTCGGTTCAGACCTCTAATTAGTTTCACC 7386 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | ||| | | ||||||||||| ||| | |||||||| Sbjct 7387 CAAGGATCATCTTAGTCATGGATAGATTACTCAGGTTCGGGTC 7429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1815307243008