Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq126054 224 2e-56
seq125563 122 2e-25
seq125584 111 4e-22
seq67386 78.8 2e-12
>seq126054
Length=4379
Score = 224 bits (248), Expect = 2e-56
Identities = 311/417 (75%), Gaps = 20/417 (5%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 3087 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 3143
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 3144 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 3199
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 3200 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 3257
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | ||
Sbjct 3258 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCC--GT 3312
Query 247 GGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
||||||| ||||||||| || |||||||||| | ||||||||||||||| | ||
Sbjct 3313 GGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GG 3371
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
|||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||
Sbjct 3372 GGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAG 3431
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 3432 CCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 3488
>seq125563
Length=484
Score = 122 bits (134), Expect = 2e-25
Identities = 208/285 (73%), Gaps = 19/285 (7%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 214 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 270
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 271 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 326
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 327 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 384
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | ||
Sbjct 385 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCC--GT 439
Query 247 GGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTT 288
||||||| ||||||||| || |||||||||| | |||||||
Sbjct 440 GGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTT 484
>seq125584
Length=1735
Score = 111 bits (122), Expect = 4e-22
Identities = 141/193 (73%), Gaps = 17/193 (9%)
Strand=Plus/Plus
Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252
|||||||||||| || |||||||||||| || | | |||| |||
Sbjct 926 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTGACTACTCCT 982
Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309
| |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||
Sbjct 983 TCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCT 1041
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| ||||||||||||||||||| ||| |||||||||| | || | || |||| ||| |
Sbjct 1042 TTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCATTGAGGAATACTTAGGCTTAG 1101
Query 370 AGGATGGTCCCCC 382
||| |||||||||
Sbjct 1102 AGGGTGGTCCCCC 1114
>seq67386
Length=7403
Score = 78.8 bits (86), Expect = 2e-12
Identities = 79/100 (79%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328
|||||||||| ||||||||||||| | | |||||||||||| || |||||||||
Sbjct 7239 TACGGTTTCATATTCTATTTCACTCCTCGATG-GGGGTTCTTTTCACCCTTCCCTCACAA 7181
Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
||||| ||| ||| |||| | || |||||||| |||||
Sbjct 7180 TACTACTTCTTTATTAGTCACT-AGGAGTATTTATCCTTG 7142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1240033820928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |