Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq126054 232 2e-58 seq125584 167 5e-39 seq94481 134 3e-29 seq34881 104 5e-20 seq83711 89.7 1e-15 seq105899 84.2 5e-14 seq83590 73.4 9e-11 >seq126054 Length=4379 Score = 232 bits (256), Expect = 2e-58 Identities = 303/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 2471 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 2530 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 2531 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 2590 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | | Sbjct 2591 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGC 2646 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 2647 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 2702 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 2703 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 2761 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 2762 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 2821 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 2822 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 2870 >seq125584 Length=1735 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 354 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 410 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 411 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 470 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 471 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 530 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 531 GTTTCCCTCTCG 542 >seq94481 Length=1751 Score = 134 bits (148), Expect = 3e-29 Identities = 275/399 (69%), Gaps = 20/399 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1362 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1421 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCT-ACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || ||||| ||| Sbjct 1422 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCCTTACTCAAGCCG 1481 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || | |||| | | | | || |||| || || | | Sbjct 1482 ACATTCTCGCTTCCGCTTCG--TNCACCNC-CGCTNGCNNGGGTGCTTN-CCTCTAAGGC 1537 Query 178 G--ACGCTCCCCTACCCAACCAC-----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 | ||||||||||||| | || | | | ||||||||| || ||| |||| Sbjct 1538 GGAACGCTCCCCTACCAATGCATTTTTTATA---TCCCACAGCTTTGGAAGATCGCTTA- 1593 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| |||| | | | ||||| |||||||||||||| |||| |||||| Sbjct 1594 GCCCCGTT-CATCTTCGGTTCAAGAGCGCTTGATCAGTGAGCTATTACACACTGTTTCAA 1652 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 | |||||| |||| |||| |||||||||| | ||| || || || | || ||| ||| Sbjct 1653 GAATGGCTACTTCTAAGCAAACCTCCTGGCTATCTCTGCCACCCCTCCTCATTTATCACC 1712 Query 351 GAGTCACCACTTA-GGGGCCTTAGCTGATGATCTGGGCT 388 || || ||| ||||||||||||| |||| ||||| Sbjct 1713 AAGCGGTCATTTACGGGGCCTTAGCTGGTGATTCGGGCT 1751 >seq34881 Length=879 Score = 104 bits (114), Expect = 5e-20 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 || |||| |||||| |||| |||||||| ||||||||| |||| |||||| || |||| Sbjct 763 CAATGAGTTATTACACACTATTTCAAGGGTGGCTGCTTTTAAGCAAACCTCTTGACTGTC 704 Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 | | | | | || || ||| |||| | || |||||||||||| ||| ||||| | Sbjct 703 TGTGTACCCCTACCTCTTTTATCACTAAACGGTCATTTAGGGGCCTTAACTGGTGATCCG 644 Query 385 GGCTGTTTCCCTCTC 399 ||||||||||||||| Sbjct 643 GGCTGTTTCCCTCTC 629 >seq83711 Length=2981 Score = 89.7 bits (98), Expect = 1e-15 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| ||||| |||| | || ||||||||| |||||| || | | || |||||| || Sbjct 2481 AAGGGTGGCTACTTCTAGGCAAACCTCCTGCTTGTCTCTACACCCCTACCTCCTTTGTCA 2422 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||| || |||||| ||||| ||| ||||||||||||||| ||||||| Sbjct 2421 CTGAACAGTCATTTAGGGACCTTAACTGGTGATCTGGGCTGTTTTCCTCTCG 2370 >seq105899 Length=2598 Score = 84.2 bits (92), Expect = 5e-14 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| ||||| |||| | || ||||||||| |||||| || | | || |||||| || Sbjct 233 AAGGGTGGCTACTTCTAGGCAAACCTCCTGCTTGTCTCTACACCCCTACCTCCTTTGTCA 174 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG-TTTCCCTCTCG 400 |||| || |||||| ||||| ||| |||||||||||| ||| ||||||| Sbjct 173 CTGAACAGTCATTTAGGGACCTTAACTGGTGATCTGGGCTGTTTTNCCTCTCG 121 >seq83590 Length=4076 Score = 73.4 bits (80), Expect = 9e-11 Identities = 100/140 (71%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 260 TTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGG 319 |||| |||| ||| ||| |||||||||||||| || |||||| | || || ||| | | Sbjct 2451 TTGATCAGTAAGCCGTTATGCACTCTTTCAAGGGTGCTTGCTTCTAGGCAAATCTCGTAG 2510 Query 320 TTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATG 379 ||||| ||| | || || ||| ||| ||| || |||||||||||||| || Sbjct 2511 CTGTCTTTGCACCATTACCTCTTTTATTACTAAGTGGTCATTTAGGGGCCTTAGCCAGTG 2570 Query 380 ATCTGGGCTGTTTCCCTCTC 399 | | || | ||||||||| Sbjct 2571 ACCCAAGCCGATTCCCTCTC 2590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176114551808