Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq126055 163 5e-38
seq125562 140 5e-31
seq6532 140 5e-31
seq11929 136 7e-30
seq58177 107 3e-21
seq94772 73.4 7e-11
>seq126055
Length=3997
Score = 163 bits (180), Expect = 5e-38
Identities = 207/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 2659 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 2718
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 2719 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 2778
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 2779 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 2838
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 2839 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 2898
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 2899 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 2943
>seq125562
Length=1343
Score = 140 bits (154), Expect = 5e-31
Identities = 205/288 (71%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| ||
Sbjct 484 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 543
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 544 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 603
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
||||| || ||||| | ||| || | | || | | | |||||| |
Sbjct 604 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 658
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|| | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||
Sbjct 659 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 718
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 719 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 766
>seq6532
Length=3813
Score = 140 bits (154), Expect = 5e-31
Identities = 205/288 (71%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| ||
Sbjct 1285 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 1344
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 1345 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 1404
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
||||| || ||||| | ||| || | | || | | | |||||| |
Sbjct 1405 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 1459
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|| | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||
Sbjct 1460 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 1519
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 1520 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 1567
>seq11929
Length=257
Score = 136 bits (150), Expect = 7e-30
Identities = 167/227 (74%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 64 TCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCA 123
|||| || |||||||||||||||||| ||| | |||||| |||| || | | ||||
Sbjct 2 TCCG-ATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCC 60
Query 124 AGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183
|| |||||| | || | ||||||||||| | ||| || | |||||
Sbjct 61 AGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAA 120
Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||
Sbjct 121 AAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTAT 180
Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 181 TACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 227
>seq58177
Length=2192
Score = 107 bits (118), Expect = 3e-21
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210
||||||||||| | ||| || | ||||| || |||||| | |||||| |||
Sbjct 476 GGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCC 535
Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270
||| | |||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 536 AATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGC 595
Query 271 CGTGGCTTATTCCTCAG 287
|| ||||||| | |||
Sbjct 596 CGATGCTTATTTCCCAG 612
>seq94772
Length=724
Score = 73.4 bits (80), Expect = 7e-11
Identities = 88/120 (73%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 578 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 637
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 638 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 827787205882
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |