Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq120065 131 2e-28
seq103845 131 2e-28
seq94462 129 6e-28
seq94380 122 9e-26
seq110680 114 1e-23
seq116060 89.7 5e-16
seq112642 89.7 5e-16
seq116267 84.2 2e-14
seq101993 84.2 2e-14
>seq120065
Length=417
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 49 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 108
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 109 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 166
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 167 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 226
Query 190 T 190
|
Sbjct 227 T 227
>seq103845
Length=957
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 283 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 224
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 223 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 166
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 165 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 106
Query 190 T 190
|
Sbjct 105 T 105
>seq94462
Length=1518
Score = 129 bits (142), Expect = 6e-28
Identities = 141/182 (77%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 892 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 833
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 832 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 775
Query 130 TAAATACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
| || | ||| ||||||||| | | ||||| || |||| |||||||||||||||||||
Sbjct 774 TTAACAGGGACAGTCGGGGGCGATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 715
Query 189 AT 190
||
Sbjct 714 AT 713
>seq94380
Length=2920
Score = 122 bits (134), Expect = 9e-26
Identities = 133/173 (77%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 19 TTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAAT 77
||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| ||||
Sbjct 2920 TTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAAC 2861
Query 78 AGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACG 137
| |||||| | |||| ||||| ||| || | ||| || |||||||| || | |
Sbjct 2860 ATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGATTAACAGG 2803
Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
|| ||||||||| | ||||| || |||| |||||||||||||||||||||
Sbjct 2802 GACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2750
>seq110680
Length=588
Score = 114 bits (126), Expect = 1e-23
Identities = 131/172 (76%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 147 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 206
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 207 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 264
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181
| || | ||| ||||||||| | ||||| || |||| ||||||||||||
Sbjct 265 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCT 316
>seq116060
Length=1789
Score = 89.7 bits (98), Expect = 5e-16
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| ||||| |||| | |||||| | |||| ||||| ||| || | |||
Sbjct 1469 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 1527
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177
|| |||||||| || | ||| ||||||||| | ||||| || |||| ||||||||
Sbjct 1528 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 1586
Query 178 TTCTTGGATTTAT 190
|||||||||||||
Sbjct 1587 TTCTTGGATTTAT 1599
>seq112642
Length=2312
Score = 89.7 bits (98), Expect = 5e-16
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| ||||| |||| | |||||| | |||| ||||| ||| || | |||
Sbjct 531 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 473
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177
|| |||||||| || | ||| ||||||||| | ||||| || |||| ||||||||
Sbjct 472 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 414
Query 178 TTCTTGGATTTAT 190
|||||||||||||
Sbjct 413 TTCTTGGATTTAT 401
>seq116267
Length=1298
Score = 84.2 bits (92), Expect = 2e-14
Identities = 101/134 (75%), Gaps = 3/134 (2%)
Strand=Plus/Minus
Query 58 ATACATTACCATGGAATAA-TAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA 116
|||||||| ||||| |||| | |||||| | |||| ||||| ||| || | |||
Sbjct 497 ATACATTAGCATGGGATAACNATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGA 439
Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176
|| |||||||| || | ||| ||||||||| | ||||| || |||| |||||||
Sbjct 438 TCGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAA 380
Query 177 ATTCTTGGATTTAT 190
||||||||||||||
Sbjct 379 ATTCTTGGATTTAT 366
>seq101993
Length=682
Score = 84.2 bits (92), Expect = 2e-14
Identities = 101/134 (75%), Gaps = 3/134 (2%)
Strand=Plus/Minus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| ||||| |||| | |||||| | |||| ||||| ||| || | |||
Sbjct 465 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 407
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAA 176
|| |||||||| || | ||| ||||||||| | ||||| || |||| |||||||
Sbjct 406 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCNATTCGTATTTCATAGTCAGAGGTGAA 348
Query 177 ATTCTTGGATTTAT 190
||||||||||||||
Sbjct 347 ATTCTTGGATTTAT 334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511374335680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |