Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq120065 131 2e-28 seq103845 131 2e-28 seq94462 129 6e-28 seq94380 122 9e-26 seq110680 114 1e-23 seq116060 89.7 5e-16 seq112642 89.7 5e-16 seq116267 84.2 2e-14 seq101993 84.2 2e-14 >seq120065 Length=417 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 49 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 108 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 109 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 166 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 167 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 226 Query 190 T 190 | Sbjct 227 T 227 >seq103845 Length=957 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 283 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 224 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 223 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 166 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 165 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 106 Query 190 T 190 | Sbjct 105 T 105 >seq94462 Length=1518 Score = 129 bits (142), Expect = 6e-28 Identities = 141/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 892 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 833 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 832 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 775 Query 130 TAAATACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | || | ||| ||||||||| | | ||||| || |||| ||||||||||||||||||| Sbjct 774 TTAACAGGGACAGTCGGGGGCGATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 715 Query 189 AT 190 || Sbjct 714 AT 713 >seq94380 Length=2920 Score = 122 bits (134), Expect = 9e-26 Identities = 133/173 (77%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 19 TTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAAT 77 ||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| |||| Sbjct 2920 TTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAAC 2861 Query 78 AGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACG 137 | |||||| | |||| ||||| ||| || | ||| || |||||||| || | | Sbjct 2860 ATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGATTAACAGG 2803 Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 2802 GACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2750 >seq110680 Length=588 Score = 114 bits (126), Expect = 1e-23 Identities = 131/172 (76%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 147 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 206 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 207 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 264 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 | || | ||| ||||||||| | ||||| || |||| |||||||||||| Sbjct 265 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCT 316 >seq116060 Length=1789 Score = 89.7 bits (98), Expect = 5e-16 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 1469 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 1527 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 1528 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 1586 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 1587 TTCTTGGATTTAT 1599 >seq112642 Length=2312 Score = 89.7 bits (98), Expect = 5e-16 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 531 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 473 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 472 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 414 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 413 TTCTTGGATTTAT 401 >seq116267 Length=1298 Score = 84.2 bits (92), Expect = 2e-14 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAA-TAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA 116 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 497 ATACATTAGCATGGGATAACNATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGA 439 Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 || |||||||| || | ||| ||||||||| | ||||| || |||| ||||||| Sbjct 438 TCGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAA 380 Query 177 ATTCTTGGATTTAT 190 |||||||||||||| Sbjct 379 ATTCTTGGATTTAT 366 >seq101993 Length=682 Score = 84.2 bits (92), Expect = 2e-14 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 465 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 407 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAA 176 || |||||||| || | ||| ||||||||| | ||||| || |||| ||||||| Sbjct 406 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCNATTCGTATTTCATAGTCAGAGGTGAA 348 Query 177 ATTCTTGGATTTAT 190 |||||||||||||| Sbjct 347 ATTCTTGGATTTAT 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511374335680