Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq126055 329 1e-87 seq125562 266 1e-68 seq6532 266 1e-68 seq11908 228 2e-57 seq61060 156 1e-35 seq124151 132 1e-28 seq11929 120 9e-25 seq67386 109 2e-21 seq58177 105 2e-20 seq78974 93.3 1e-16 >seq126055 Length=3997 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 3171 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 3112 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 3111 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 3052 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 3051 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 2992 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 2991 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 2932 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 2931 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 2872 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 2871 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 2830 >seq125562 Length=1343 Score = 266 bits (294), Expect = 1e-68 Identities = 257/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 993 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 934 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 933 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 874 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| ||||||| || ||||| | | Sbjct 873 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAAT 814 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 813 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 754 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 753 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 694 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 693 CT-GGGCGTAAAGGGCACGTAGGCGGT 668 >seq6532 Length=3813 Score = 266 bits (294), Expect = 1e-68 Identities = 257/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 1794 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 1735 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 1734 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 1675 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| ||||||| || ||||| | | Sbjct 1674 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAAT 1615 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 1614 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 1555 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 1554 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 1495 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 1494 CT-GGGCGTAAAGGGCACGTAGGCGGT 1469 >seq11908 Length=925 Score = 228 bits (252), Expect = 2e-57 Identities = 194/238 (82%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 684 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 743 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 744 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 803 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 804 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 863 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 864 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGA 921 >seq61060 Length=4190 Score = 156 bits (172), Expect = 1e-35 Identities = 201/274 (73%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 166 TGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||||||||||||| ||| || |||||| ||||||| ||||||||| | | ||| Sbjct 2287 TGATTAGCTAGTTGGTGAGGCAATAGCTTACTAAGGCGATGATCAGTAGTTGGTCCAAGA 2346 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 |||| |||||||||| ||| ||||||| ||| ||||||| |||||| |||||||| Sbjct 2347 AAATGATTAGCCACATTGGGACTAAGACACGACCCAGACTCCTATGGGAGGTAGCAGTGG 2406 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345 ||||| || |||||| |||||||| | || || |||||||| | ||| ||| Sbjct 2407 GGAATTTTTGGCAATGGAAGGAAGCCTGAAGGAGTAATGCCGCGTGGAGGTAGAAAACCT 2466 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAG-GAAG--ATAATGACGGTACTTGAGGAGGAAGCC 402 ||||||| || || | | || | |||| ||| ||||||| | | | ||| Sbjct 2467 ATGGGTCGTGAA-CTTTTTTTTCTGGAGAAGAAATAGTGACGGTGTCTAGGAAATAAGTA 2525 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 ||||||||| |||| ||||||| | ||||||| Sbjct 2526 TCGGCTAACTCTGTGCTAGCAGCCACAGTAATAC 2559 >seq124151 Length=1160 Score = 132 bits (146), Expect = 1e-28 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||||||| Sbjct 118 GGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGG 59 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||| || | |||||||| ||||||||| | ||||| |||||||| Sbjct 58 GGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTG 13 >seq11929 Length=257 Score = 120 bits (132), Expect = 9e-25 Identities = 101/123 (82%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| ||||||||| |||||||||||||||||||||| Sbjct 235 AATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACA 176 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||||||||||||||| | | |||||||||| || |||||||| || |||| Sbjct 175 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAA 117 Query 498 GTC 500 ||| Sbjct 116 GTC 114 >seq67386 Length=7403 Score = 109 bits (120), Expect = 2e-21 Identities = 115/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||| |||||||||| || || | ||| ||| || | ||||||| | | || Sbjct 3322 TCTGATTAACTAGTTGGTATGGCAATAG-TTAT-AAGATGATGTTCAGTAGTTGGTCCGA 3379 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| || ||||| | ||| ||||| | |||||||||||||| || | ||| Sbjct 3380 GAGGATGATCAGCAACATTAGGACTAAGACATGACCCAAACTCCTACGGAAGATAATAGT 3439 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCT 312 ||||||| || | |||||||||||||||| Sbjct 3440 GGGGAATTTTCCGCAATGGGCAAAAGCCT 3468 >seq58177 Length=2192 Score = 105 bits (116), Expect = 2e-20 Identities = 86/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 603 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 544 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 543 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 502 >seq78974 Length=7354 Score = 93.3 bits (102), Expect = 1e-16 Identities = 227/342 (66%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || || ||||||||||||| || ||| || | |||||||| | ||||||||| | Sbjct 6722 CGTGTTTGATTAGCTAGTTAGTGAGGCAATAGTTTACCAAGAAAATTATCAGTAGCTGGT 6781 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||| || ||||| ||||| | || |||||||| | | |||||| ||| ||| || Sbjct 6782 TCGAGGGGATGATCAACCACACTAAAATTGAGACACAGCCTAAACTCTTACAAGAGATAG 6841 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 | |||||||| || |||| || |||| |||| ||||| || | || | | || Sbjct 6842 TAATGGGGAATTTTTTGCAATATGCGAAAGTCTGACAGAGCAATGCTGTGTAAAAGTAGA 6901 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||| | ||| || || ||| | ||| | ||| | ||||| || ||||| | Sbjct 6902 AGGCTTATAGGTTGTGAACTTCTTTTCTCGAAGAATAAGCAATGATAATATTTGAGAAAT 6961 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||| |||||||| ||| | || |||||| | | || | ||||||| Sbjct 6962 AAGTATTGGCTAACTCTACACCAACGGCTTTAATAATACAAAAGATGCAATTGTTATCC- 7020 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| | | |||||||||| || |||||| || ||| || Sbjct 7021 GAAATGGTTGGGCGTAAAGTGTCTATAGGTGACTTTTTAGGT 7062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495710897408