Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq94462 300 3e-79 seq94380 298 1e-78 seq110664 131 3e-28 >seq94462 Length=1518 Score = 300 bits (332), Expect = 3e-79 Identities = 254/307 (83%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 306 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 247 Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||||||| | | | || | | |||||||||||||||||||||||||||||||||| Sbjct 246 AGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 187 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 186 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGG 127 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 126 CCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTG 68 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| Sbjct 67 TTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCC 8 Query 317 CTGCCCT 323 ||||||| Sbjct 7 CTGCCCT 1 >seq94380 Length=2920 Score = 298 bits (330), Expect = 1e-78 Identities = 228/265 (86%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTT-AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| ||||||| ||||||||||| | | | || | | |||||||||||||||||||||| Sbjct 2295 GCCAGCTTCTTNAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGG 2236 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2235 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 2176 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAG 243 || ||||||||| ||| | |||||||||| | ||| | | ||||| ||||||||| Sbjct 2175 CTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAANTTTCATCGTGATGGGGATAG 2117 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||| Sbjct 2116 ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC 2057 Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||| Sbjct 2056 GTTGACTACGTCCCTGCCCTTTGTA 2032 >seq110664 Length=1279 Score = 131 bits (144), Expect = 3e-28 Identities = 89/99 (90%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA-TGCCTAGTAAGCGCG 289 ||| ||| |||||| |||||||||| ||| |||||||||||||| | ||||||||||||| Sbjct 1279 GTGATGGAGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAANTTCCTAGTAAGCGCG 1220 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| |||||||| ||||||||||||||||||| Sbjct 1219 AGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 1181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946005182976