Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq94462 300 3e-79
seq94380 298 1e-78
seq110664 131 3e-28
>seq94462
Length=1518
Score = 300 bits (332), Expect = 3e-79
Identities = 254/307 (83%), Gaps = 4/307 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77
|| |||||||| | |||||||| |||| | || | | | | || ||| |||||||
Sbjct 306 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 247
Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136
||||||||||| | | | || | | ||||||||||||||||||||||||||||||||||
Sbjct 246 AGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 187
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
|||||||||||||||||||||||||||||||||| | |||||||| || ||||||
Sbjct 186 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGG 127
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||||||
Sbjct 126 CCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTG 68
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||
Sbjct 67 TTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCC 8
Query 317 CTGCCCT 323
|||||||
Sbjct 7 CTGCCCT 1
>seq94380
Length=2920
Score = 298 bits (330), Expect = 1e-78
Identities = 228/265 (86%), Gaps = 4/265 (2%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTT-AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| ||||||| ||||||||||| | | | || | | ||||||||||||||||||||||
Sbjct 2295 GCCAGCTTCTTNAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGG 2236
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2235 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 2176
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAG 243
|| ||||||||| ||| | |||||||||| | ||| | | ||||| |||||||||
Sbjct 2175 CTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAANTTTCATCGTGATGGGGATAG 2117
Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303
| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 2116 ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC 2057
Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328
||||| |||||||||||||||||||
Sbjct 2056 GTTGACTACGTCCCTGCCCTTTGTA 2032
>seq110664
Length=1279
Score = 131 bits (144), Expect = 3e-28
Identities = 89/99 (90%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA-TGCCTAGTAAGCGCG 289
||| ||| |||||| |||||||||| ||| |||||||||||||| | |||||||||||||
Sbjct 1279 GTGATGGAGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAANTTCCTAGTAAGCGCG 1220
Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||||| |||||||| |||||||||||||||||||
Sbjct 1219 AGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 1181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946005182976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |