Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq126054 197 5e-48
seq125583 192 2e-46
seq112139 86.0 2e-14
seq94445 82.4 3e-13
seq41702 78.8 3e-12
>seq126054
Length=4379
Score = 197 bits (218), Expect = 5e-48
Identities = 393/570 (69%), Gaps = 23/570 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 1485 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 1544
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 1545 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 1603
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 1604 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 1663
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234
| | ||||||||||| ||| | | ||| | | || || | |||| |
Sbjct 1664 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 1720
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | | || ||||||| || | || || || | || |||||| ||| | | ||||
Sbjct 1721 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAAGCCC--AAAGCCAATCCCAGGGAACAGTG 1778
Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||| | | |||||||| |||| | || | | ||||||| || | | |
Sbjct 1779 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 1838
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||
Sbjct 1839 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 1897
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1898 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 1957
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 1958 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 2011
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 2012 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 2041
>seq125583
Length=1492
Score = 192 bits (212), Expect = 2e-46
Identities = 342/495 (69%), Gaps = 38/495 (8%)
Strand=Plus/Plus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 672 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 730
Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190
||| |||||| | ||| || || || || |||||| |||| | |||
Sbjct 731 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 790
Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250
||||| ||||| | | || | | ||| | || | |||||||||
Sbjct 791 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 835
Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309
||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 836 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTA 895
Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369
|||| |||| | | ||||||| || | | ||||||||||||| | ||
Sbjct 896 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 955
Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429
|||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 956 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 1015
Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489
||||||||||||||| |||| |||||| ||||||||||| |||||||| |||
Sbjct 1016 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATT------ 1069
Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549
|| | || | ||| |||| || || ||||||||||||||||| |||
Sbjct 1070 ----CAAAGCAACT------AACACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTC 1119
Query 550 AGTCCGTATACCTCG 564
|| | ||||| |||
Sbjct 1120 AGACTCTATACATCG 1134
>seq112139
Length=683
Score = 86.0 bits (94), Expect = 2e-14
Identities = 142/203 (70%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 83 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 142
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | | |||||||
Sbjct 143 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 201
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 202 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 261
Query 178 CACTACGGTCAGAGTGGTATTTC 200
| | ||||||||||| ||
Sbjct 262 TAGCTCTTCCAGAGTGGTATCTC 284
>seq94445
Length=9930
Score = 82.4 bits (90), Expect = 3e-13
Identities = 100/135 (74%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71
|||| |||||||||||||||| ||| || ||||| | || || || | | ||
Sbjct 9922 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCCGGCCCGA 9863
Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131
|| |||||||| |||||||||||| |||||||||| | | ||||||| ||||| |
Sbjct 9862 GGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAACGAAACTGTCT 9804
Query 132 ACCAGGCACTGTCCC 146
||| | ||||||||
Sbjct 9803 ACCTGAGACTGTCCC 9789
>seq41702
Length=4314
Score = 78.8 bits (86), Expect = 3e-12
Identities = 55/63 (87%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 421 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480
|||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||
Sbjct 1892 ACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCC 1833
Query 481 ATT 483
|||
Sbjct 1832 ATT 1830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1700252558592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |