Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq90076 116 3e-21 >seq90076 Length=2428 Score = 116 bits (128), Expect = 3e-21 Identities = 356/545 (65%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || || || || ||||||| |||||| ||||| ||||| | || Sbjct 1469 ATGTACAAGAAAGCCGAGGCATCGTTTTGGACGGCGGAGGAAGTCGACTTGTCGCAGGAT 1528 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| | | | | || |||| ||||||| || || | || Sbjct 1529 CTCCGTCACTGGGAAAGCCTTACCTCTGACGAGAAACACTTCATTACTCACGTCCTCGCC 1588 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| ||||| || ||| | | | ||| | | || Sbjct 1589 TTCTTCGCCGCCTCCGACGGCATCGTTCTCGAAAATCTCGCCGCCAGGTTCATGAAAGAA 1648 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| | ||||| || ||||| ||||||||||| || || ||||| | ||| Sbjct 1649 GTCCAAGTCGCCGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCAATCGAGAACATTCAC 1708 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || || |||||| ||||| |||| || ||||||| || | ||| |||| | Sbjct 1709 TCCGAAATGTACTCCCTTCTCCTCGAAACCTACATCAAAGACTCCGAAGAA-AAGAACCA 1767 Query 61396 -TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTC 61452 | ||| |||||||| ||| | ||| | | || ||| || | |||||| || Sbjct 1768 CCTCTTCCGCGCCATCGAAACGGTGCCG--TGCGTCGCCAAAAAGGCCAAGTGGGCCCTC 1825 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||||| | | | | ||||| | || ||| | | || || || || Sbjct 1826 GATTGGATCGACGG---CTCCGAGACATTCGCGGAGCGACTAATTGCCTTCGCTTGCGTG 1882 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 || || |||| ||| ||| ||| |||||| |||||| | || || || ||| | Sbjct 1883 GAAGGAATATTCTTCTCGGGAAGCTTTTGCGCAATATTTTGGCTAAAAAAGCGCGGATTA 1942 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || | |||||| || ||||| || || || |||||||| | || || ||| Sbjct 1943 ATGCCGGGATTAACCTTCTCAAACGAGTTAATCTCGCGAGACGAGGGACTTCACTGCGAT 2002 Query 61633 TTTGC 61637 || || Sbjct 2003 TTCGC 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396956796598880