Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq3595 165 1e-38
seq105 127 4e-27
seq7515 122 2e-25
>seq3595
Length=6473
Score = 165 bits (182), Expect = 1e-38
Identities = 194/251 (77%), Gaps = 10/251 (4%)
Strand=Plus/Plus
Query 72 CTTTTACTTT-GAAAAAATTAGAGTGTTCAA-AGCAGGCCTTTGCTCGAATACATTAGCA 129
|| ||||||| ||| ||||||||||| |||| |||| |||| | | |||||||||||
Sbjct 2857 CTGTTACTTTTGAAGAAATTAGAGTGCTCAACAGCAAGCCTACGTCTGGATACATTAGCA 2916
Query 130 TGGAATAATAGA-ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188
||| |||| | |||||| | || | ||||| |||||| | || || ||||||
Sbjct 2917 TGGGATAACAATCATAGGA--TTCGATCCTATTGTGTTGGCCTTCGTGATCGGAGTAATG 2974
Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTAT-TCAATTGTCAGAGGTGAAATTCTTGGATT 247
||||| ||| | |||||| || || |||| | || |||||||||||||||||||||||
Sbjct 2975 ATTAACAGG-ACAGTCGGCGGGTTC-GTATGTTCATAGTCAGAGGTGAAATTCTTGGATT 3032
Query 248 -TATTGAAGACTAACTACTGCGAAAGCGTTCACCAA-GGATGTTTTCATTAATCAGTGAA 305
||| ||||| ||| ||||||||||| || |||| ||||||||||| ||||| |||
Sbjct 3033 GTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGGATGTTTTCACTAATCGAAGAA 3092
Query 306 CGAAAGTTAGG 316
|||||||| ||
Sbjct 3093 CGAAAGTTGGG 3103
>seq105
Length=221364
Score = 127 bits (140), Expect = 4e-27
Identities = 194/257 (75%), Gaps = 17/257 (7%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAA-ATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATG 131
||||||||||| || ||||||||| |||| ||| |||| |||| | |||||||||||||
Sbjct 6368 TTTACTTTGAAGAAGATTAGAGTGCTCAAGGCAAGCCTACGCTCTGGATACATTAGCATG 6427
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA-T 190
| |||| | |||||| | || | ||||| |||||| | | ||| || ||||||| |
Sbjct 6428 GGATAACATCATAGGAATTTCGATCCTATTGTGTTGGCCT-TCGGATCGGAGTAATGAGT 6486
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA-GAGGTGAAATTCTTGGATTTA 249
||| ||||| ||||||| | || ||||| | | ||| |||||||||||||| ||||||
Sbjct 6487 TAACAGGGACAGTCGGGCAT-TC-GTATTTCA-TATCAGGAGGTGAAATTCTT-GATTTA 6542
Query 250 T-TGAAGACTAACTACT--GCGA-AAGCGTTCACCAAGGATGTTTTCAT--TAATCA-GT 302
| |||||| ||| ||| | || |||| || || | ||||||| | | |||| ||
Sbjct 6543 TGAGAAGACGAACAACTCGGGGATAAGCATTTGCCGAATGTGTTTTCTTTCTGATCATGT 6602
Query 303 GAACG-AAAGTTAGGGG 318
| || |||||| ||||
Sbjct 6603 TATCGCAAAGTTGGGGG 6619
>seq7515
Length=2596
Score = 122 bits (134), Expect = 2e-25
Identities = 104/123 (85%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 197 GGATAGTCGGGGGTGTCAGTA-TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
||| ||||||||| | ||| || || ||||||||||||||||| |||||||| ||||
Sbjct 594 GGACAGTCGGGGGCATTCGTAATTTCATAGTCAGAGGTGAAATTCT-GGATTTAT-GAAG 651
Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
|| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| |
Sbjct 652 ACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTTG 710
Query 316 GGG 318
|||
Sbjct 711 GGG 713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915128522880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |