Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3595 165 1e-38 seq105 127 4e-27 seq7515 122 2e-25 >seq3595 Length=6473 Score = 165 bits (182), Expect = 1e-38 Identities = 194/251 (77%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 72 CTTTTACTTT-GAAAAAATTAGAGTGTTCAA-AGCAGGCCTTTGCTCGAATACATTAGCA 129 || ||||||| ||| ||||||||||| |||| |||| |||| | | ||||||||||| Sbjct 2857 CTGTTACTTTTGAAGAAATTAGAGTGCTCAACAGCAAGCCTACGTCTGGATACATTAGCA 2916 Query 130 TGGAATAATAGA-ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||| |||| | |||||| | || | ||||| |||||| | || || |||||| Sbjct 2917 TGGGATAACAATCATAGGA--TTCGATCCTATTGTGTTGGCCTTCGTGATCGGAGTAATG 2974 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTAT-TCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||| ||| | |||||| || || |||| | || ||||||||||||||||||||||| Sbjct 2975 ATTAACAGG-ACAGTCGGCGGGTTC-GTATGTTCATAGTCAGAGGTGAAATTCTTGGATT 3032 Query 248 -TATTGAAGACTAACTACTGCGAAAGCGTTCACCAA-GGATGTTTTCATTAATCAGTGAA 305 ||| ||||| ||| ||||||||||| || |||| ||||||||||| ||||| ||| Sbjct 3033 GTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGGATGTTTTCACTAATCGAAGAA 3092 Query 306 CGAAAGTTAGG 316 |||||||| || Sbjct 3093 CGAAAGTTGGG 3103 >seq105 Length=221364 Score = 127 bits (140), Expect = 4e-27 Identities = 194/257 (75%), Gaps = 17/257 (7%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAA-ATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATG 131 ||||||||||| || ||||||||| |||| ||| |||| |||| | ||||||||||||| Sbjct 6368 TTTACTTTGAAGAAGATTAGAGTGCTCAAGGCAAGCCTACGCTCTGGATACATTAGCATG 6427 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA-T 190 | |||| | |||||| | || | ||||| |||||| | | ||| || ||||||| | Sbjct 6428 GGATAACATCATAGGAATTTCGATCCTATTGTGTTGGCCT-TCGGATCGGAGTAATGAGT 6486 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA-GAGGTGAAATTCTTGGATTTA 249 ||| ||||| ||||||| | || ||||| | | ||| |||||||||||||| |||||| Sbjct 6487 TAACAGGGACAGTCGGGCAT-TC-GTATTTCA-TATCAGGAGGTGAAATTCTT-GATTTA 6542 Query 250 T-TGAAGACTAACTACT--GCGA-AAGCGTTCACCAAGGATGTTTTCAT--TAATCA-GT 302 | |||||| ||| ||| | || |||| || || | ||||||| | | |||| || Sbjct 6543 TGAGAAGACGAACAACTCGGGGATAAGCATTTGCCGAATGTGTTTTCTTTCTGATCATGT 6602 Query 303 GAACG-AAAGTTAGGGG 318 | || |||||| |||| Sbjct 6603 TATCGCAAAGTTGGGGG 6619 >seq7515 Length=2596 Score = 122 bits (134), Expect = 2e-25 Identities = 104/123 (85%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 197 GGATAGTCGGGGGTGTCAGTA-TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 ||| ||||||||| | ||| || || ||||||||||||||||| |||||||| |||| Sbjct 594 GGACAGTCGGGGGCATTCGTAATTTCATAGTCAGAGGTGAAATTCT-GGATTTAT-GAAG 651 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| | Sbjct 652 ACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTTG 710 Query 316 GGG 318 ||| Sbjct 711 GGG 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915128522880