Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4976 131 7e-28 seq3326 95.1 5e-17 seq3102 87.8 7e-15 >seq4976 Length=10917 Score = 131 bits (144), Expect = 7e-28 Identities = 131/166 (79%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 512 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 453 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAA-GTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||| ||| |||||||||||||| |||| ||| | || ||||||| |||| ||| Sbjct 452 TAAATACGGGCGAGAGACCGATAGCGAACAAGGTAACGCGAGGTAAAGATG-AAAGGACT 394 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||| || | ||| || | ||||||||| | ||||||||| Sbjct 393 TTGAAAAGGGA-TCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 349 >seq3326 Length=15980 Score = 95.1 bits (104), Expect = 5e-17 Identities = 120/159 (75%), Gaps = 11/159 (7%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT--CTAAA 92 || |||||||| |||||||||||||||| | || ||| |||||||| | | | | Sbjct 2113 TCTACGAGTCGGGTTGTTTGGGAATGCA---CCAATCGGGCGGTAAATTCCGTACCAAGG 2057 Query 93 GCTAAATATTGGCCAGA-GACCGATAGCGCACAAGTA---GAGTGATCGAAAGATGAAAA 148 |||||||| ||| ||| ||||||||||| ||||||| | || ||||||||||| Sbjct 2056 GCTAAATACGGGCGAGAGGACCGATAGCGAACAAGTACCCGCCGGAGGTAAAGATGAAAA 1997 Query 149 -GCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186 | |||||| |||||| || ||| || | ||||||||| Sbjct 1996 GGGACTTTGAAAAGAG-GTCAAAGAGTGCTTGAAATTGT 1959 >seq3102 Length=5379 Score = 87.8 bits (96), Expect = 7e-15 Identities = 131/173 (76%), Gaps = 21/173 (12%) Strand=Plus/Minus Query 39 CGAGTC--GAGTTGTTTGGGAATG-CAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG-C 94 |||||| | |||||||||||||| |||| || ||| |||||||| | || |||| | Sbjct 236 CGAGTCCGGTGTTGTTTGGGAATGGCAGCC--AATCGGGCGGTAAATTCCGTCCAAAGGC 179 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTA-----GAGTGATCGAAAGATGAAAAG 149 ||||| ||| |||||||||||||| ||||||| |||| | | ||||||||||| Sbjct 178 TAAAT---GGCGAGAGACCGATAGCG-ACAAGTACCGCCGAGT-ACC--AAGATGAAAAG 126 Query 150 CACTTTGGAAAGAGAGT-TAAAAAGCACGTG-AAATTGT-TGAAAGGGAAGCG 199 | || | ||||||||| ||| || | || ||||||| || ||||||||| Sbjct 125 GATTTGGAAAAGAGAGTCCAAAGAGTGCTTGAAAATTGTCGGAGAGGGAAGCG 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079832475500