Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq4976 131 7e-28
seq3326 95.1 5e-17
seq3102 87.8 7e-15
>seq4976
Length=10917
Score = 131 bits (144), Expect = 7e-28
Identities = 131/166 (79%), Gaps = 3/166 (2%)
Strand=Plus/Minus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 512 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 453
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAA-GTAGAGTGATCGAAAGATGAAAAGCACT 153
|||||| ||| |||||||||||||| |||| ||| | || ||||||| |||| |||
Sbjct 452 TAAATACGGGCGAGAGACCGATAGCGAACAAGGTAACGCGAGGTAAAGATG-AAAGGACT 394
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||| |||| || | ||| || | ||||||||| | |||||||||
Sbjct 393 TTGAAAAGGGA-TCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 349
>seq3326
Length=15980
Score = 95.1 bits (104), Expect = 5e-17
Identities = 120/159 (75%), Gaps = 11/159 (7%)
Strand=Plus/Minus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT--CTAAA 92
|| |||||||| |||||||||||||||| | || ||| |||||||| | | | |
Sbjct 2113 TCTACGAGTCGGGTTGTTTGGGAATGCA---CCAATCGGGCGGTAAATTCCGTACCAAGG 2057
Query 93 GCTAAATATTGGCCAGA-GACCGATAGCGCACAAGTA---GAGTGATCGAAAGATGAAAA 148
|||||||| ||| ||| ||||||||||| ||||||| | || |||||||||||
Sbjct 2056 GCTAAATACGGGCGAGAGGACCGATAGCGAACAAGTACCCGCCGGAGGTAAAGATGAAAA 1997
Query 149 -GCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186
| |||||| |||||| || ||| || | |||||||||
Sbjct 1996 GGGACTTTGAAAAGAG-GTCAAAGAGTGCTTGAAATTGT 1959
>seq3102
Length=5379
Score = 87.8 bits (96), Expect = 7e-15
Identities = 131/173 (76%), Gaps = 21/173 (12%)
Strand=Plus/Minus
Query 39 CGAGTC--GAGTTGTTTGGGAATG-CAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG-C 94
|||||| | |||||||||||||| |||| || ||| |||||||| | || |||| |
Sbjct 236 CGAGTCCGGTGTTGTTTGGGAATGGCAGCC--AATCGGGCGGTAAATTCCGTCCAAAGGC 179
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTA-----GAGTGATCGAAAGATGAAAAG 149
||||| ||| |||||||||||||| ||||||| |||| | | |||||||||||
Sbjct 178 TAAAT---GGCGAGAGACCGATAGCG-ACAAGTACCGCCGAGT-ACC--AAGATGAAAAG 126
Query 150 CACTTTGGAAAGAGAGT-TAAAAAGCACGTG-AAATTGT-TGAAAGGGAAGCG 199
| || | ||||||||| ||| || | || ||||||| || |||||||||
Sbjct 125 GATTTGGAAAAGAGAGTCCAAAGAGTGCTTGAAAATTGTCGGAGAGGGAAGCG 73
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079832475500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |