Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq8 136 1e-29
seq702 125 2e-26
>seq8
Length=41745
Score = 136 bits (150), Expect = 1e-29
Identities = 223/304 (73%), Gaps = 27/304 (9%)
Strand=Plus/Minus
Query 13 GCATCTTCA-CAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
||||||||| |||| || || ||||||| ||| ||| | |||||| ||| |||||
Sbjct 315 GCATCTTCAGCAGC-ATGTCTATTTCAC-GAGCCTCTTCCG-AGACAGTGCCCAGATCGT 259
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGC-TACCTTAGGACCGT 130
|||||| ||||||| || ||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 258 TACGCCTTTCGTGCGGG-CGGAACTTACCCGACAAGGAA-TTCGCTTACCTTAAGACCGT 201
Query 131 TATTGTTACGGCCGCCGTTTACC-GGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAA 185
||| | ||||||||||||| ||| ||||||||| || ||| | | | || | |
Sbjct 200 TATAG-TACGGCCGCCGTTCACCGGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCA 142
Query 186 CCCCATCAATTAACCTT-CCGGCAC-CGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243
|| | || ||||| ||||||| |||||||||||| ||| |||| | ||||
Sbjct 141 CCAACTTCCTTGACCTTGCCGGCACTGGGGCAGGCGTCA-GCCCCATACATGGTTCTTCG 83
Query 244 TGTTTGCAGAGTGCTGT-------GTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296
||||| ||| ||| |||||| ||||||||||| || ||||| | ||
Sbjct 82 ACTTTGC---GTGATGTATCTCTGGTTTTTGGTAAACAGTCGCCCCGCTCTGGTCAC-TC 27
Query 297 GACC 300
||||
Sbjct 26 GACC 23
>seq702
Length=61672
Score = 125 bits (138), Expect = 2e-26
Identities = 126/157 (80%), Gaps = 9/157 (6%)
Strand=Plus/Minus
Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75
||||||||| || || ||||| ||| ||| | |||||| ||| |||||||||
Sbjct 195 TCTTCACAGACATGTCTATTTCCACGAGCCTCTCCCG-AGACAGTGCCCAGATCGTTACG 137
Query 76 CCATT-CGTGCAGGTCGGAACTTACC----CGACAAGGAATTTCGCTACCTT-AGGA-CC 128
|| || ||||| |||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 136 CCTTTTCGTGCGGGTCGGAACTTACCTCACCGACAAGGAATTTCGCTACCTTTAGGAACC 77
Query 129 GTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
|||| ||||||||||||||| ||||| |||||| ||
Sbjct 76 GTTAA-GTTACGGCCGCCGTTCACCGGTGCTTCGGTC 41
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260701531520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |