Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8 136 1e-29 seq702 125 2e-26 >seq8 Length=41745 Score = 136 bits (150), Expect = 1e-29 Identities = 223/304 (73%), Gaps = 27/304 (9%) Strand=Plus/Minus Query 13 GCATCTTCA-CAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 ||||||||| |||| || || ||||||| ||| ||| | |||||| ||| ||||| Sbjct 315 GCATCTTCAGCAGC-ATGTCTATTTCAC-GAGCCTCTTCCG-AGACAGTGCCCAGATCGT 259 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGC-TACCTTAGGACCGT 130 |||||| ||||||| || ||||||||||||||||||||| ||||| ||||||| |||||| Sbjct 258 TACGCCTTTCGTGCGGG-CGGAACTTACCCGACAAGGAA-TTCGCTTACCTTAAGACCGT 201 Query 131 TATTGTTACGGCCGCCGTTTACC-GGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAA 185 ||| | ||||||||||||| ||| ||||||||| || ||| | | | || | | Sbjct 200 TATAG-TACGGCCGCCGTTCACCGGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCA 142 Query 186 CCCCATCAATTAACCTT-CCGGCAC-CGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 || | || ||||| ||||||| |||||||||||| ||| |||| | |||| Sbjct 141 CCAACTTCCTTGACCTTGCCGGCACTGGGGCAGGCGTCA-GCCCCATACATGGTTCTTCG 83 Query 244 TGTTTGCAGAGTGCTGT-------GTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 ||||| ||| ||| |||||| ||||||||||| || ||||| | || Sbjct 82 ACTTTGC---GTGATGTATCTCTGGTTTTTGGTAAACAGTCGCCCCGCTCTGGTCAC-TC 27 Query 297 GACC 300 |||| Sbjct 26 GACC 23 >seq702 Length=61672 Score = 125 bits (138), Expect = 2e-26 Identities = 126/157 (80%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75 ||||||||| || || ||||| ||| ||| | |||||| ||| ||||||||| Sbjct 195 TCTTCACAGACATGTCTATTTCCACGAGCCTCTCCCG-AGACAGTGCCCAGATCGTTACG 137 Query 76 CCATT-CGTGCAGGTCGGAACTTACC----CGACAAGGAATTTCGCTACCTT-AGGA-CC 128 || || ||||| |||||||||||||| |||||||||||||||||||||| |||| || Sbjct 136 CCTTTTCGTGCGGGTCGGAACTTACCTCACCGACAAGGAATTTCGCTACCTTTAGGAACC 77 Query 129 GTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 |||| ||||||||||||||| ||||| |||||| || Sbjct 76 GTTAA-GTTACGGCCGCCGTTCACCGGTGCTTCGGTC 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260701531520