Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq8 178 3e-42 seq702 138 2e-30 >seq8 Length=41745 Score = 178 bits (196), Expect = 3e-42 Identities = 219/282 (78%), Gaps = 18/282 (6%) Strand=Plus/Minus Query 4 CCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATC 63 |||||||||||| | | || | ||||||| ||| || || ||||||||||||| ||| Sbjct 318 CCGGCATCTTCAGCAGCATGTCTATTTCAC-GAGCCTCTTCC-GAGACAGTGCCCAGATC 261 Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT-ACCTTAGGACC 122 ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||| Sbjct 260 GTTACGCCTTTCGTGCGGG-CGGAACTTACCCGACAAGGAATT-CGCTTACCTTAAGACC 203 Query 123 GTTATAGTTACGGCCGCCGTTTA-CTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---T 177 ||||||| ||||||||||||| | | ||||||| || | ||| | | | || | Sbjct 202 GTTATAG-TACGGCCGCCGTTCACCGGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGT 144 Query 178 AACAGATCCCCTTAACCTT-CCAGCAC-CGGGCAGGCGTCAGCTCCTATACATCGTCTTG 235 || | |||| ||||| || |||| |||||||||||||| || |||||| || | Sbjct 143 CACCAACTTCCTTGACCTTGCCGGCACTGGGGCAGGCGTCAGC-CCCATACATGGTTCTT 85 Query 236 CGACTTAGC---AGAAACCTGT-GTTTTTGGTAAACAGTCGC 273 |||||| || | | || | ||||||||||||||||||| Sbjct 84 CGACTTTGCGTGATGTATCTCTGGTTTTTGGTAAACAGTCGC 43 >seq702 Length=61672 Score = 138 bits (152), Expect = 2e-30 Identities = 103/115 (90%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCC-TTTCGTGCGGGTCGGAACTTAC----CCGACAAG 101 ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| Sbjct 159 GAGACAGTGCCCAGATCGTTACGCCTTTTCGTGCGGGTCGGAACTTACCTCACCGACAAG 100 Query 102 GAATTTCGCTACC-TTAGG-ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||| ||||| ||||||| |||||||||||||||| || || |||| Sbjct 99 GAATTTCGCTACCTTTAGGAACCGTTA-AGTTACGGCCGCCGTTCACCGGTGCTT 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062317026560