Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq8 178 3e-42
seq702 138 2e-30
>seq8
Length=41745
Score = 178 bits (196), Expect = 3e-42
Identities = 219/282 (78%), Gaps = 18/282 (6%)
Strand=Plus/Minus
Query 4 CCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATC 63
|||||||||||| | | || | ||||||| ||| || || ||||||||||||| |||
Sbjct 318 CCGGCATCTTCAGCAGCATGTCTATTTCAC-GAGCCTCTTCC-GAGACAGTGCCCAGATC 261
Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT-ACCTTAGGACC 122
||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||
Sbjct 260 GTTACGCCTTTCGTGCGGG-CGGAACTTACCCGACAAGGAATT-CGCTTACCTTAAGACC 203
Query 123 GTTATAGTTACGGCCGCCGTTTA-CTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---T 177
||||||| ||||||||||||| | | ||||||| || | ||| | | | || |
Sbjct 202 GTTATAG-TACGGCCGCCGTTCACCGGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGT 144
Query 178 AACAGATCCCCTTAACCTT-CCAGCAC-CGGGCAGGCGTCAGCTCCTATACATCGTCTTG 235
|| | |||| ||||| || |||| |||||||||||||| || |||||| || |
Sbjct 143 CACCAACTTCCTTGACCTTGCCGGCACTGGGGCAGGCGTCAGC-CCCATACATGGTTCTT 85
Query 236 CGACTTAGC---AGAAACCTGT-GTTTTTGGTAAACAGTCGC 273
|||||| || | | || | |||||||||||||||||||
Sbjct 84 CGACTTTGCGTGATGTATCTCTGGTTTTTGGTAAACAGTCGC 43
>seq702
Length=61672
Score = 138 bits (152), Expect = 2e-30
Identities = 103/115 (90%), Gaps = 8/115 (7%)
Strand=Plus/Minus
Query 47 GAGACAGTGCCCAAATCGTTACGCC-TTTCGTGCGGGTCGGAACTTAC----CCGACAAG 101
||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 159 GAGACAGTGCCCAGATCGTTACGCCTTTTCGTGCGGGTCGGAACTTACCTCACCGACAAG 100
Query 102 GAATTTCGCTACC-TTAGG-ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154
||||||||||||| ||||| ||||||| |||||||||||||||| || || ||||
Sbjct 99 GAATTTCGCTACCTTTAGGAACCGTTA-AGTTACGGCCGCCGTTCACCGGTGCTT 46
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062317026560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |