Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq6119 241 4e-61 seq1126 96.9 1e-17 >seq6119 Length=2614 Score = 241 bits (266), Expect = 4e-61 Identities = 305/395 (77%), Gaps = 27/395 (7%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTC-AAAGGAATTGACGGGGACCCGCAC--AAGCGGTGG-AGC-ATGT 62 ||||| |||||||| |||||||||||||||| ||||||| |||| |||| ||| |||| Sbjct 522 GCAAGAATGAAACTCCAAAGGAATTGACGGGGGCCCGCACCAAAGCCGTGGGAGCCATGT 581 Query 63 GGTTTAATTCGAA-GCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT 121 ||||||||||| | |||| |||||||||||| | |||||||| | | || || ||| Sbjct 582 GGTTTAATTCGTATGCAAAGCGAAGAACCTTTACCGGGCTTGACATGCGC-GATCC-TCT 639 Query 122 AGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGT-CGTCAG 180 || | | ||| |||||||| || | ||||||| || |||| ||| |||||| Sbjct 640 TGAAAGAAGGGTG---CCTTCGGGA-ACGCGGACACAGGTGGTG-ATGGCTGTTCGTCAG 694 Query 181 CTCGTGTC-GTGA--GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTT-AG 236 |||||| | || | | ||||||||||||||||||||||||||||||||| | || || Sbjct 695 CTCGTGGCCGTTAAGGTTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAAG 754 Query 237 TTGCCATCATT--AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGA-AGG 293 |||||| | || ||||| || || || | |||||||||||| || |||||||| ||| Sbjct 755 TTGCCACCGTTTGAAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAGAGG 814 Query 294 TGGGGACGACGTCAAATCA--TCATGCCCCTTATGATTTGGGCTACACAC--GTGCTAC- 348 || ||| |||||||| ||| ||||||||||||| ||||| |||||| ||||||| Sbjct 815 TGAGGATGACGTCAAGTCAATCCATGCCCCTTATGCCCTGGGCGACACACCTGTGCTACA 874 Query 349 AATGGACAATACAAAGGGCAGCGA-AACCGCGAGG 382 ||||| | |||||||| |||| |||||||| Sbjct 875 AATGGCCGGGACAAAGGGTCGCGATCCCCGCGAGG 909 >seq1126 Length=41732 Score = 96.9 bits (106), Expect = 1e-17 Identities = 83/97 (86%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGG-AATTG-AC---GGGGACCCGCACAAGCGGTGGAGCATGT 62 ||||| ||||||||||||| ||||| || |||| ||||||||||||||| ||||||| Sbjct 37543 GCAAGAATGAAACTCAAAGGGAATTGGACCGGGGGGCCCCGCACAAGCGGTGTAGCATGT 37484 Query 63 --GGTTTAATTCGAAGCAACGCG-AAGAACCTTACCA 96 |||||||||||| |||| ||| ||||||||||||| Sbjct 37483 TGGGTTTAATTCGATGCAAAGCGAAAGAACCTTACCA 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503882537600