Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq6119 241 4e-61
seq1126 96.9 1e-17
>seq6119
Length=2614
Score = 241 bits (266), Expect = 4e-61
Identities = 305/395 (77%), Gaps = 27/395 (7%)
Strand=Plus/Plus
Query 8 GCAAGGTTGAAACTC-AAAGGAATTGACGGGGACCCGCAC--AAGCGGTGG-AGC-ATGT 62
||||| |||||||| |||||||||||||||| ||||||| |||| |||| ||| ||||
Sbjct 522 GCAAGAATGAAACTCCAAAGGAATTGACGGGGGCCCGCACCAAAGCCGTGGGAGCCATGT 581
Query 63 GGTTTAATTCGAA-GCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT 121
||||||||||| | |||| |||||||||||| | |||||||| | | || || |||
Sbjct 582 GGTTTAATTCGTATGCAAAGCGAAGAACCTTTACCGGGCTTGACATGCGC-GATCC-TCT 639
Query 122 AGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGT-CGTCAG 180
|| | | ||| |||||||| || | ||||||| || |||| ||| ||||||
Sbjct 640 TGAAAGAAGGGTG---CCTTCGGGA-ACGCGGACACAGGTGGTG-ATGGCTGTTCGTCAG 694
Query 181 CTCGTGTC-GTGA--GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTT-AG 236
|||||| | || | | ||||||||||||||||||||||||||||||||| | || ||
Sbjct 695 CTCGTGGCCGTTAAGGTTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAAG 754
Query 237 TTGCCATCATT--AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGA-AGG 293
|||||| | || ||||| || || || | |||||||||||| || |||||||| |||
Sbjct 755 TTGCCACCGTTTGAAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAGAGG 814
Query 294 TGGGGACGACGTCAAATCA--TCATGCCCCTTATGATTTGGGCTACACAC--GTGCTAC- 348
|| ||| |||||||| ||| ||||||||||||| ||||| |||||| |||||||
Sbjct 815 TGAGGATGACGTCAAGTCAATCCATGCCCCTTATGCCCTGGGCGACACACCTGTGCTACA 874
Query 349 AATGGACAATACAAAGGGCAGCGA-AACCGCGAGG 382
||||| | |||||||| |||| ||||||||
Sbjct 875 AATGGCCGGGACAAAGGGTCGCGATCCCCGCGAGG 909
>seq1126
Length=41732
Score = 96.9 bits (106), Expect = 1e-17
Identities = 83/97 (86%), Gaps = 8/97 (8%)
Strand=Plus/Minus
Query 8 GCAAGGTTGAAACTCAAAGG-AATTG-AC---GGGGACCCGCACAAGCGGTGGAGCATGT 62
||||| ||||||||||||| ||||| || |||| ||||||||||||||| |||||||
Sbjct 37543 GCAAGAATGAAACTCAAAGGGAATTGGACCGGGGGGCCCCGCACAAGCGGTGTAGCATGT 37484
Query 63 --GGTTTAATTCGAAGCAACGCG-AAGAACCTTACCA 96
|||||||||||| |||| ||| |||||||||||||
Sbjct 37483 TGGGTTTAATTCGATGCAAAGCGAAAGAACCTTACCA 37447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503882537600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |