Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq7515 167 4e-39
seq3650 96.9 6e-18
>seq7515
Length=2596
Score = 167 bits (184), Expect = 4e-39
Identities = 192/238 (81%), Gaps = 19/238 (8%)
Strand=Plus/Minus
Query 18 AGTGTAGCG-CGCG-TGCGGCCCAGAACATC-TAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1207 AGTGTAGCGTCGCGGTGCGGCCCAGAACATCCTAAGTGCATCACAGACCTGTTATTGCCT 1148
Query 75 CAAACTTCCATTGGCTGGAA--GCCAATAGTCCCTCTAAGAAGCCAGCCACCAA-CCAT- 130
||||||||| ||||| || | || ||||||||||||||||| ||| || ||
Sbjct 1147 CAAACTTCC-TTGGCCTAAACGGGCATGAGTCCCTCTAAGAAGCC-GCCGTGAAGGGATG 1090
Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC-GGAATTAA---CCAGA 186
|| | | | |||||||| | ||||||| ||||| ||| |||| ||| ||||
Sbjct 1089 CCTCCAACGTAGCAGTTAGCAGG-TGAGGTCTC-TTCGTAATCGGGAAGTAAACGGCAGA 1032
Query 187 CA-AATCACTCCACCAACTAAGAACGGCCATGCA-CCACCACCCATAGAATCAAGAAA 242
|| |||| | ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1031 CAGAATCGC-CCACCAACT-AGAACGGCCATGCACCCACCACCCATAGAATCAAGAAA 976
>seq3650
Length=6679
Score = 96.9 bits (106), Expect = 6e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 3932 ACCAACTAAGAACGGCCATGCACCACCGCCCATAGAATCAAGAAAGAGCTCTCAGTCTGT 3991
Query 258 C 258
|
Sbjct 3992 C 3992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796739714610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |