Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq7515 167 4e-39 seq3650 96.9 6e-18 >seq7515 Length=2596 Score = 167 bits (184), Expect = 4e-39 Identities = 192/238 (81%), Gaps = 19/238 (8%) Strand=Plus/Minus Query 18 AGTGTAGCG-CGCG-TGCGGCCCAGAACATC-TAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1207 AGTGTAGCGTCGCGGTGCGGCCCAGAACATCCTAAGTGCATCACAGACCTGTTATTGCCT 1148 Query 75 CAAACTTCCATTGGCTGGAA--GCCAATAGTCCCTCTAAGAAGCCAGCCACCAA-CCAT- 130 ||||||||| ||||| || | || ||||||||||||||||| ||| || || Sbjct 1147 CAAACTTCC-TTGGCCTAAACGGGCATGAGTCCCTCTAAGAAGCC-GCCGTGAAGGGATG 1090 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC-GGAATTAA---CCAGA 186 || | | | |||||||| | ||||||| ||||| ||| |||| ||| |||| Sbjct 1089 CCTCCAACGTAGCAGTTAGCAGG-TGAGGTCTC-TTCGTAATCGGGAAGTAAACGGCAGA 1032 Query 187 CA-AATCACTCCACCAACTAAGAACGGCCATGCA-CCACCACCCATAGAATCAAGAAA 242 || |||| | ||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1031 CAGAATCGC-CCACCAACT-AGAACGGCCATGCACCCACCACCCATAGAATCAAGAAA 976 >seq3650 Length=6679 Score = 96.9 bits (106), Expect = 6e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| Sbjct 3932 ACCAACTAAGAACGGCCATGCACCACCGCCCATAGAATCAAGAAAGAGCTCTCAGTCTGT 3991 Query 258 C 258 | Sbjct 3992 C 3992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796739714610