Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7220 320 3e-85 seq922 300 3e-79 seq2039 131 3e-28 >seq7220 Length=3188 Score = 320 bits (354), Expect = 3e-85 Identities = 212/231 (92%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| Sbjct 1 GTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCT 60 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 120 Query 186 CTTGGC-TGCCACAAGC-CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||| Sbjct 121 CTTGGCTTGCCACAAGCGCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAA 180 Query 244 ATTTCGAGGGACTAAAGGATC-GATAGGCCACACTTTCATGGTTTGTATTC 293 ||| ||| || |||||||||| |||||||||| |||||| |||| |||||| Sbjct 181 ATTCCGAAGGTCTAAAGGATCGGATAGGCCACGCTTTCACGGTTCGTATTC 231 >seq922 Length=56487 Score = 300 bits (332), Expect = 3e-79 Identities = 240/276 (87%), Gaps = 10/276 (4%) Strand=Plus/Plus Query 25 CGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT 84 || ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 42047 CGCCGGGCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGT-TAAACCCAGCTCACGT 42105 Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA-TAGGAA 143 |||||||| |||||||||||||||||| ||| |||||||||||| |||| |||| | Sbjct 42106 TCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATTAGGGA 42165 Query 144 GAGCCGACA-TCGAAGGATCAAAAAGCAACGTCGCTATG-AACGCTTGG-CTGCCACAAG 200 | |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| || Sbjct 42166 G-CCCGACATTCGAAGGATCAAAAAGCAACGTCGCTATGAAACGCTTGGCCTGCCCACAG 42224 Query 201 CCAGTT-ATCCCTGTGGTAACTTTTC-TGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258 |||||| ||||||||||||||||||| || |||||||||| ||||| | ||| || |||| Sbjct 42225 CCAGTTAATCCCTGTGGTAACTTTTCTTGACACCTCTAGCTTCAAA-TCCGAAGGTCTAA 42283 Query 259 AGGATCGATAGGCCA-CACTTTCATGGTTTGTATTC 293 ||||||||||||||| | |||| |||| |||||| Sbjct 42284 AGGATCGATAGGCCACCGCTTTTCCGGTTCGTATTC 42319 >seq2039 Length=24490 Score = 131 bits (144), Expect = 3e-28 Identities = 185/239 (77%), Gaps = 31/239 (13%) Strand=Plus/Minus Query 77 GCTCACGTTCCCT--ATTAGTGG----GTGAACAATCCAACGCTTACCGAATTCTG--CT 128 |||||||||||| ||| |||| |||||||||| ||| ||| |||||||| || Sbjct 14241 GCTCACGTTCCCCTGATTGGTGGTGGTGTGAACAATCAAACACTTGGTGAATTCTGGCCT 14182 Query 129 T-CGGTATGATAGGAAGAGCCGACATCG-AAGGATCAAAAAGCAACGTCGCT-ATGAACG 185 | | ||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct 14181 TACACAATGATAGGAAGCA-----ATCGGAAGGATCAAA--GCAACGTCGCTGATGAACG 14129 Query 186 CTTGGCTGCCACAAGCCA-GTTATCCCTGTGGTAACTTTT-CTGGCACCTC-TAGCCTC- 241 ||||||||||||| |||| |||| ||||||||||||||| |||| |||| |||| || Sbjct 14128 CTTGGCTGCCACA-GCCACGTTAGTCCTGTGGTAACTTTTACTGGACCCTCGTAGCTTCG 14070 Query 242 AAATTT--CG-AGGGACTAAAGGA-TCG--ATAGGCCACACTTTCA-TGGTTTGTATTC 293 |||| | || |||| |||||||| ||| |||| ||| |||||| |||| |||||| Sbjct 14069 AAATCTGCCGAAGGGTCTAAAGGACTCGCAGTAGG-CACGCTTTCACCGGTTCGTATTC 14012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854333271360