Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq7220 320 3e-85
seq922 300 3e-79
seq2039 131 3e-28
>seq7220
Length=3188
Score = 320 bits (354), Expect = 3e-85
Identities = 212/231 (92%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125
||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 1 GTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCT 60
Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 120
Query 186 CTTGGC-TGCCACAAGC-CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243
|||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 121 CTTGGCTTGCCACAAGCGCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAA 180
Query 244 ATTTCGAGGGACTAAAGGATC-GATAGGCCACACTTTCATGGTTTGTATTC 293
||| ||| || |||||||||| |||||||||| |||||| |||| ||||||
Sbjct 181 ATTCCGAAGGTCTAAAGGATCGGATAGGCCACGCTTTCACGGTTCGTATTC 231
>seq922
Length=56487
Score = 300 bits (332), Expect = 3e-79
Identities = 240/276 (87%), Gaps = 10/276 (4%)
Strand=Plus/Plus
Query 25 CGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT 84
|| ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 42047 CGCCGGGCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGT-TAAACCCAGCTCACGT 42105
Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA-TAGGAA 143
|||||||| |||||||||||||||||| ||| |||||||||||| |||| |||| |
Sbjct 42106 TCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATTAGGGA 42165
Query 144 GAGCCGACA-TCGAAGGATCAAAAAGCAACGTCGCTATG-AACGCTTGG-CTGCCACAAG 200
| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 42166 G-CCCGACATTCGAAGGATCAAAAAGCAACGTCGCTATGAAACGCTTGGCCTGCCCACAG 42224
Query 201 CCAGTT-ATCCCTGTGGTAACTTTTC-TGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258
|||||| ||||||||||||||||||| || |||||||||| ||||| | ||| || ||||
Sbjct 42225 CCAGTTAATCCCTGTGGTAACTTTTCTTGACACCTCTAGCTTCAAA-TCCGAAGGTCTAA 42283
Query 259 AGGATCGATAGGCCA-CACTTTCATGGTTTGTATTC 293
||||||||||||||| | |||| |||| ||||||
Sbjct 42284 AGGATCGATAGGCCACCGCTTTTCCGGTTCGTATTC 42319
>seq2039
Length=24490
Score = 131 bits (144), Expect = 3e-28
Identities = 185/239 (77%), Gaps = 31/239 (13%)
Strand=Plus/Minus
Query 77 GCTCACGTTCCCT--ATTAGTGG----GTGAACAATCCAACGCTTACCGAATTCTG--CT 128
|||||||||||| ||| |||| |||||||||| ||| ||| |||||||| ||
Sbjct 14241 GCTCACGTTCCCCTGATTGGTGGTGGTGTGAACAATCAAACACTTGGTGAATTCTGGCCT 14182
Query 129 T-CGGTATGATAGGAAGAGCCGACATCG-AAGGATCAAAAAGCAACGTCGCT-ATGAACG 185
| | ||||||||||| |||| |||||||||| ||||||||||| |||||||
Sbjct 14181 TACACAATGATAGGAAGCA-----ATCGGAAGGATCAAA--GCAACGTCGCTGATGAACG 14129
Query 186 CTTGGCTGCCACAAGCCA-GTTATCCCTGTGGTAACTTTT-CTGGCACCTC-TAGCCTC- 241
||||||||||||| |||| |||| ||||||||||||||| |||| |||| |||| ||
Sbjct 14128 CTTGGCTGCCACA-GCCACGTTAGTCCTGTGGTAACTTTTACTGGACCCTCGTAGCTTCG 14070
Query 242 AAATTT--CG-AGGGACTAAAGGA-TCG--ATAGGCCACACTTTCA-TGGTTTGTATTC 293
|||| | || |||| |||||||| ||| |||| ||| |||||| |||| ||||||
Sbjct 14069 AAATCTGCCGAAGGGTCTAAAGGACTCGCAGTAGG-CACGCTTTCACCGGTTCGTATTC 14012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854333271360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |