Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq73 138 4e-30 seq3508 89.7 2e-15 >seq73 Length=180190 Score = 138 bits (152), Expect = 4e-30 Identities = 158/210 (75%), Gaps = 12/210 (6%) Strand=Plus/Minus Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| |||||||||||||| |||||||| |||| | || | ||| | ||| Sbjct 55667 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GAGCCCAG--GGCTC-----CTC 55619 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTT-CACTCCCCGCCAGGGGTACTTTT 509 | || | ||| || | ||||||| || |||||| ||||||||| ||||| ||||| Sbjct 55618 CCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTACACTCCCCGATGGGGGTTCTTTT 55559 Query 510 CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGG 569 |||| ||||||||||||||| | |||||||||||||| |||||||||||| ||| | Sbjct 55558 CACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAG 55499 Query 570 GTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||| | |||||||||| ||| || Sbjct 55498 GTGGTCCTTGCTGATTCACACGGGATTCCA 55469 >seq3508 Length=17436 Score = 89.7 bits (98), Expect = 2e-15 Identities = 162/224 (72%), Gaps = 16/224 (7%) Strand=Plus/Minus Query 140 GCACCTAAATGCATTTCGGGG-AGAACCA-GCTATCACGAAGTTTGATTGGCCTTTCACC 197 || ||| || ||||||||||| ||||||| |||| | | | || || | ||||||| Sbjct 293 GCGCCTCAACGCATTTCGGGGGAGAACCACGCTAGCTCTGGTTCAGAGTG-CATTTCACC 235 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTC-GGTCCTCCACGCGGT 256 |||| ||||| ||||| || | |||||||| | ||| ||||| || ||||||| || Sbjct 234 CCTAACCACAACTCATCAGCTGATTTTTCAACATCAGTCGGTTCGGGACCTCCACTTAGT 175 Query 257 CTT-ACCC--GCGCTTCAACCT--GCCCATGGATAGATCACTTCGCTTCGGGT-CTTGAT 310 || |||| | ||||| ||| | ||| |||||||||| | ||||||| | | | Sbjct 174 TTTCACCCAAGTACTTCATCCTTGGGTCATAGATAGATCACACAGGTTCGGGTCCATAAG 115 Query 311 C-GTGCCACTCATACGCCCTAT-TCGGACTCGCTTTCGCTACGG 352 | ||| || | ||||||| ||||||||||||||||||| Sbjct 114 CAGTGACAAT----TGCCCTATGAAGGACTCGCTTTCGCTACGG 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817458045440