Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq73 138 4e-30
seq3508 89.7 2e-15
>seq73
Length=180190
Score = 138 bits (152), Expect = 4e-30
Identities = 158/210 (75%), Gaps = 12/210 (6%)
Strand=Plus/Minus
Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450
|||| |||||||||||||| |||||||| |||| | || | ||| | |||
Sbjct 55667 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GAGCCCAG--GGCTC-----CTC 55619
Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTT-CACTCCCCGCCAGGGGTACTTTT 509
| || | ||| || | ||||||| || |||||| ||||||||| ||||| |||||
Sbjct 55618 CCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTACACTCCCCGATGGGGGTTCTTTT 55559
Query 510 CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGG 569
|||| ||||||||||||||| | |||||||||||||| |||||||||||| ||| |
Sbjct 55558 CACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAG 55499
Query 570 GTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||| | |||||||||| ||| ||
Sbjct 55498 GTGGTCCTTGCTGATTCACACGGGATTCCA 55469
>seq3508
Length=17436
Score = 89.7 bits (98), Expect = 2e-15
Identities = 162/224 (72%), Gaps = 16/224 (7%)
Strand=Plus/Minus
Query 140 GCACCTAAATGCATTTCGGGG-AGAACCA-GCTATCACGAAGTTTGATTGGCCTTTCACC 197
|| ||| || ||||||||||| ||||||| |||| | | | || || | |||||||
Sbjct 293 GCGCCTCAACGCATTTCGGGGGAGAACCACGCTAGCTCTGGTTCAGAGTG-CATTTCACC 235
Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTC-GGTCCTCCACGCGGT 256
|||| ||||| ||||| || | |||||||| | ||| ||||| || ||||||| ||
Sbjct 234 CCTAACCACAACTCATCAGCTGATTTTTCAACATCAGTCGGTTCGGGACCTCCACTTAGT 175
Query 257 CTT-ACCC--GCGCTTCAACCT--GCCCATGGATAGATCACTTCGCTTCGGGT-CTTGAT 310
|| |||| | ||||| ||| | ||| |||||||||| | ||||||| | | |
Sbjct 174 TTTCACCCAAGTACTTCATCCTTGGGTCATAGATAGATCACACAGGTTCGGGTCCATAAG 115
Query 311 C-GTGCCACTCATACGCCCTAT-TCGGACTCGCTTTCGCTACGG 352
| ||| || | ||||||| |||||||||||||||||||
Sbjct 114 CAGTGACAAT----TGCCCTATGAAGGACTCGCTTTCGCTACGG 75
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817458045440
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |