Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq73 161 2e-37 >seq73 Length=180190 Score = 161 bits (178), Expect = 2e-37 Identities = 209/280 (75%), Gaps = 9/280 (3%) Strand=Plus/Minus Query 145 AAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAG 202 |||||||||||| ||||||| |||| | ||| |||| | ||||||| || || Sbjct 55725 AAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAG 55668 Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCACTGCTT 261 |||| | | |||| | ||| ||| |||| |||| | | || | | ||||||||||| Sbjct 55667 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGGGCTCCTCCCACTGCTT 55610 Query 262 GTACGCATACGGTTTCAGGATCTATTT-CACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 | || |||||||||| | ||||||| |||||||| | |||||||||||| || ||| Sbjct 55609 GGGAGCTTACGGTTTCATGTTCTATTTACACTCCCCGATG-GGGGTTCTTTTCACCCTTC 55551 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380 ||||||||||||| ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 55550 CCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCT 55491 Query 381 CCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | ||||| || || | ||||| || | ||||||| Sbjct 55490 TGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 55451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241503031040