Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3508 114 3e-23 >seq3508 Length=17436 Score = 114 bits (126), Expect = 3e-23 Identities = 138/176 (78%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||||| | ||| ||||||| || | ||| || |||| ||||||||||||||||| Sbjct 624 AGCCCCGTTTCATCTTCGGCGCA-AAGCGCTTCGATCAGT-AGCTATTACGCACTCTTCA 567 Query 289 AAGGATGGCTGCTTCCAAGCC--AACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCC 346 |||| ||||||||||| || | |||||||||| ||||| | || | || |||||| Sbjct 566 AAGGGTGGCTGCTTCCTAGGCAAAACCTCCTGGCTGTCTTCTGCACCCTAC-TCCTTTAT 508 Query 347 CAC-TGAGTCACCACTTAG-GGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| |||| || |||| |||||||||||| ||||| |||||||||||||||| Sbjct 507 CACATGAGCGGTCATTTAGCGGGCCTTAGCTG-TGATC-CGGCTGTTTCCCTCTCG 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177508029440