Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq105 86.0 6e-15
seq3595 78.8 1e-12
>seq105
Length=221364
Score = 86.0 bits (94), Expect = 6e-15
Identities = 136/182 (75%), Gaps = 10/182 (5%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAA-ATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATG 70
||||||||||| || ||||||| | |||| ||| |||| |||| | |||||||| ||||
Sbjct 6368 TTTACTTTGAAGAAGATTAGAGTGCTCAAGGCAAGCCTACGCTCTGGATACATTAGCATG 6427
Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA- 129
| |||| | |||||| | || | ||||| ||| || | | ||| || |||||||
Sbjct 6428 GGATAACATCATAGGAATTTCGATCCTATTGTGTTGGCCT-TCGGATCGGA-GTAATGAG 6485
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAA-AGGTGAAATTCTTGGATTT 188
| || | ||| ||||||| | || ||||| || ||| ||||||||||||| |||||
Sbjct 6486 TTAACAGGGACAGTCGGGCAT-TC-GTATTTCATA-TCAGGAGGTGAAATTCTT-GATTT 6541
Query 189 AT 190
||
Sbjct 6542 AT 6543
>seq3595
Length=6473
Score = 78.8 bits (86), Expect = 1e-12
Identities = 132/181 (73%), Gaps = 9/181 (5%)
Strand=Plus/Plus
Query 11 CTTTTACTTT-GAAAAAATTAGAGCGTTCAA-AGCAGGCCTTTGCTCGAATACATTACCA 68
|| ||||||| ||| ||||||||| | |||| |||| |||| | | |||||||| ||
Sbjct 2857 CTGTTACTTTTGAAGAAATTAGAGTGCTCAACAGCAAGCCTACGTCTGGATACATTAGCA 2916
Query 69 TGGAATAATAGA-ATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127
||| |||| | |||||| | || | ||||| ||| || | || || |||||
Sbjct 2917 TGGGATAACAATCATAGGA--TTCGATCCTATTGTGTTGGCCTTCGTGATCGGA-GTAAT 2973
Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTAT-TCAATTGTCAAAGGTGAAATTCTTGGAT 186
||| || | ||| |||||| || || |||| | || |||| |||||||||||||||||
Sbjct 2974 GATTAACA-GGACAGTCGGCGGGTTC-GTATGTTCATAGTCAGAGGTGAAATTCTTGGAT 3031
Query 187 T 187
|
Sbjct 3032 T 3032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511961262400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |