Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq105 86.0 6e-15 seq3595 78.8 1e-12 >seq105 Length=221364 Score = 86.0 bits (94), Expect = 6e-15 Identities = 136/182 (75%), Gaps = 10/182 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAA-ATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATG 70 ||||||||||| || ||||||| | |||| ||| |||| |||| | |||||||| |||| Sbjct 6368 TTTACTTTGAAGAAGATTAGAGTGCTCAAGGCAAGCCTACGCTCTGGATACATTAGCATG 6427 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA- 129 | |||| | |||||| | || | ||||| ||| || | | ||| || ||||||| Sbjct 6428 GGATAACATCATAGGAATTTCGATCCTATTGTGTTGGCCT-TCGGATCGGA-GTAATGAG 6485 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAA-AGGTGAAATTCTTGGATTT 188 | || | ||| ||||||| | || ||||| || ||| ||||||||||||| ||||| Sbjct 6486 TTAACAGGGACAGTCGGGCAT-TC-GTATTTCATA-TCAGGAGGTGAAATTCTT-GATTT 6541 Query 189 AT 190 || Sbjct 6542 AT 6543 >seq3595 Length=6473 Score = 78.8 bits (86), Expect = 1e-12 Identities = 132/181 (73%), Gaps = 9/181 (5%) Strand=Plus/Plus Query 11 CTTTTACTTT-GAAAAAATTAGAGCGTTCAA-AGCAGGCCTTTGCTCGAATACATTACCA 68 || ||||||| ||| ||||||||| | |||| |||| |||| | | |||||||| || Sbjct 2857 CTGTTACTTTTGAAGAAATTAGAGTGCTCAACAGCAAGCCTACGTCTGGATACATTAGCA 2916 Query 69 TGGAATAATAGA-ATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 ||| |||| | |||||| | || | ||||| ||| || | || || ||||| Sbjct 2917 TGGGATAACAATCATAGGA--TTCGATCCTATTGTGTTGGCCTTCGTGATCGGA-GTAAT 2973 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTAT-TCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| |||||| || || |||| | || |||| ||||||||||||||||| Sbjct 2974 GATTAACA-GGACAGTCGGCGGGTTC-GTATGTTCATAGTCAGAGGTGAAATTCTTGGAT 3031 Query 187 T 187 | Sbjct 3032 T 3032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511961262400