Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq47 179 6e-43
seq260 96.9 5e-18
>seq47
Length=25201
Score = 179 bits (198), Expect = 6e-43
Identities = 138/164 (84%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 112 CCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGA 171
|||||| ||||| ||| || ||||||||| || |||||||| |||||| |||||||
Sbjct 621 CCTCTCTTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGA 680
Query 172 ACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAAC 231
|||||||| |||||||||||||| ||||| ||| || |||||||||| ||||||||||||
Sbjct 681 ACTGTCTCACGACGTTCTGAACCTAGCTCACGTACCGCTTTAATGGGTGAACAGCCCAAC 740
Query 232 CCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|||||| || |||| |||||||||| | || ||||| ||||||
Sbjct 741 CCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCCACATCG 784
>seq260
Length=75295
Score = 96.9 bits (106), Expect = 5e-18
Identities = 178/242 (74%), Gaps = 22/242 (9%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTT-CAGCTCTT-ATCCCTTCCAAACTTAGCTTCCC-A 60
|| |||||| |||||||||||| |||| || |||| || ||||| ||| ||| |
Sbjct 63895 GGTGGGCTTACTACTTAGATGCCTTTCAGCAGTTTATCCGCTCGCAACTT-GCTACCCCA 63953
Query 61 GCTATGCACTTGGCAGTACAACTGGTGCA-CCAGAGGTTTGT-----CCATCCCGGTCCT 114
|| | | | ||| | | ||||| || |||||||| || || ||||||||||
Sbjct 63954 GCGTTAC-CGTGGACG-ATAACTGTAACATCCAGAGGTGGGTGCGTCCCTTCCCGGTCCT 64011
Query 115 CTCGTACTAAGGACAGCTCCT-CTCAAATTTC-CT--ACGCCCACGACGGATAGGGACCG 170
||||||| |||| || |||| ||| ||| | || | ||||| |||||| ||||||
Sbjct 64012 CTCGTACATAGGAAAGGTCCTCCTCCAATGACTCTAAAGCCCCACACCGGATATGGACCG 64071
Query 171 AACTGTCT-CGC-GACG-TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC--GAACAG 225
|||||||| | | |||| ||||| ||||||||| ||| || ||||||||||| |||||
Sbjct 64072 AACTGTCTGCACGGACGATTCTG-ACCCAGCTCACGTACCGCTTTAATGGGCCGTAACAG 64130
Query 226 CC 227
||
Sbjct 64131 CC 64132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780740925160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |