Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq47 179 6e-43 seq260 96.9 5e-18 >seq47 Length=25201 Score = 179 bits (198), Expect = 6e-43 Identities = 138/164 (84%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 112 CCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGA 171 |||||| ||||| ||| || ||||||||| || |||||||| |||||| ||||||| Sbjct 621 CCTCTCTTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGA 680 Query 172 ACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAAC 231 |||||||| |||||||||||||| ||||| ||| || |||||||||| |||||||||||| Sbjct 681 ACTGTCTCACGACGTTCTGAACCTAGCTCACGTACCGCTTTAATGGGTGAACAGCCCAAC 740 Query 232 CCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| || |||| |||||||||| | || ||||| |||||| Sbjct 741 CCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCCACATCG 784 >seq260 Length=75295 Score = 96.9 bits (106), Expect = 5e-18 Identities = 178/242 (74%), Gaps = 22/242 (9%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTT-CAGCTCTT-ATCCCTTCCAAACTTAGCTTCCC-A 60 || |||||| |||||||||||| |||| || |||| || ||||| ||| ||| | Sbjct 63895 GGTGGGCTTACTACTTAGATGCCTTTCAGCAGTTTATCCGCTCGCAACTT-GCTACCCCA 63953 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCA-CCAGAGGTTTGT-----CCATCCCGGTCCT 114 || | | | ||| | | ||||| || |||||||| || || |||||||||| Sbjct 63954 GCGTTAC-CGTGGACG-ATAACTGTAACATCCAGAGGTGGGTGCGTCCCTTCCCGGTCCT 64011 Query 115 CTCGTACTAAGGACAGCTCCT-CTCAAATTTC-CT--ACGCCCACGACGGATAGGGACCG 170 ||||||| |||| || |||| ||| ||| | || | ||||| |||||| |||||| Sbjct 64012 CTCGTACATAGGAAAGGTCCTCCTCCAATGACTCTAAAGCCCCACACCGGATATGGACCG 64071 Query 171 AACTGTCT-CGC-GACG-TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC--GAACAG 225 |||||||| | | |||| ||||| ||||||||| ||| || ||||||||||| ||||| Sbjct 64072 AACTGTCTGCACGGACGATTCTG-ACCCAGCTCACGTACCGCTTTAATGGGCCGTAACAG 64130 Query 226 CC 227 || Sbjct 64131 CC 64132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780740925160