Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7515 190 4e-46 >seq7515 Length=2596 Score = 190 bits (210), Expect = 4e-46 Identities = 221/275 (80%), Gaps = 20/275 (7%) Strand=Plus/Plus Query 66 CGCCGGCTTCTTAGAGGGACT-AT--CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACA 122 || |||||||||||||||||| || | | | | ||| | |||||||||||||||||||| Sbjct 1100 CGGCGGCTTCTTAGAGGGACTCATGCCCGTTTAGGCCAA-GGAAGTTTGAGGCAATAACA 1158 Query 123 GGTCTGTGATGCCCTTA-GATGTTCTGGGCCGCA-CGCG-CGCTACAC-TGACAG--AGC 176 |||||||||||| |||| |||||||||||||||| |||| |||||||| ||| | Sbjct 1159 GGTCTGTGATGCACTTAGGATGTTCTGGGCCGCACCGCGACGCTACACTTGATTGTATTG 1218 Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCT- 235 |||||| |||| |||| |||||| ||| | |||||||||| | ||| | ||||| | Sbjct 1219 CAACGA-TTCA-CACC-TGGCCGACAGG-CCGGGTAATCTT-TGAAATTTCATCGTGATG 1273 Query 236 GGGGATAGAGCATTGCAATTATT-GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||||| |||||||||| || |||||||||| ||| |||||||||||| ||| Sbjct 1274 GGGGATAGATCATTGCAATTGTTGGCTCTTCAACTGAGAAGTTCTAGTAAGCGCG-ATCA 1332 Query 295 TCAGCACGCGTTGATTAC-GTCCCTGCCCTTTGTA 328 ||||| ||||||| ||| |||||||| |||||| Sbjct 1333 TCAGC-TGCGTTGACTACTCTCCCTGCCTTTTGTA 1366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947126023680