Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3508 84.2 7e-14 seq40 78.8 3e-12 >seq3508 Length=17436 Score = 84.2 bits (92), Expect = 7e-14 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCC--AGGATG 70 ||||| | ||| ||| | | |||||||| | |||||||| | ||| || |||||| Sbjct 99 AGGGCAATTGTCACTGCTTATGGACCCGAACCTGTGTGATCTATCTATGACCCAAGGATG 158 Query 71 AAGG---TGCGGTAACACGCCCTGGAGGTCC-GAACCCACTAATGTTGAAAAATTAGGGG 126 ||| || | || || ||||||||| ||||| ||| |||||||||||| || | Sbjct 159 AAGTACTTGGGTGAAAACTAAGTGGAGGTCCCGAACCGACTGATGTTGAAAAATCAGCTG 218 Query 127 ATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||| ||||| ||||||||||| || Sbjct 219 ATGAGTTGTGGTTAGGGGTGAAATGC 244 >seq40 Length=332245 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| | Sbjct 52713 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 52772 Query 152 C 152 | Sbjct 52773 C 52773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689468042240