Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq3508 84.2 7e-14
seq40 78.8 3e-12
>seq3508
Length=17436
Score = 84.2 bits (92), Expect = 7e-14
Identities = 108/146 (74%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCC--AGGATG 70
||||| | ||| ||| | | |||||||| | |||||||| | ||| || ||||||
Sbjct 99 AGGGCAATTGTCACTGCTTATGGACCCGAACCTGTGTGATCTATCTATGACCCAAGGATG 158
Query 71 AAGG---TGCGGTAACACGCCCTGGAGGTCC-GAACCCACTAATGTTGAAAAATTAGGGG 126
||| || | || || ||||||||| ||||| ||| |||||||||||| || |
Sbjct 159 AAGTACTTGGGTGAAAACTAAGTGGAGGTCCCGAACCGACTGATGTTGAAAAATCAGCTG 218
Query 127 ATGAGCTGTGGGTAGGGGTGAAAGGC 152
||||| ||||| ||||||||||| ||
Sbjct 219 ATGAGTTGTGGTTAGGGGTGAAATGC 244
>seq40
Length=332245
Score = 78.8 bits (86), Expect = 3e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151
|||||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| |
Sbjct 52713 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 52772
Query 152 C 152
|
Sbjct 52773 C 52773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689468042240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |