Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq486 132 9e-29 seq73 96.9 6e-18 >seq486 Length=123667 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 84761 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 84820 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 84821 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 84872 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 84873 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 84930 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 84931 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 84990 Query 249 CCT 251 ||| Sbjct 84991 CCT 84993 >seq73 Length=180190 Score = 96.9 bits (106), Expect = 6e-18 Identities = 93/118 (79%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| |||||||||||| |||| |||||| | Sbjct 69552 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAATATCTTAGTAGCCAGA 69611 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTT 253 |||||||||| ||| | |||||| |||||||||||||||||| || ||||||| Sbjct 69612 GGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGTGGCGAGCGAAATTAGAGCAGCCTTT 69669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918328272960