Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq285 545 8e-153 seq922 459 9e-127 seq1353 334 2e-89 seq7220 188 2e-45 seq24 129 2e-27 seq2039 120 1e-24 >seq285 Length=93944 Score = 545 bits (604), Expect = 8e-153 Identities = 323/336 (96%), Gaps = 3/336 (1%) Strand=Plus/Plus Query 200 CGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTC 259 || ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 21465 CGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCACTTATCCTACACCTCTC 21521 Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21522 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 21581 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 || |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct 21582 TCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAAGGACAGTGGGAA 21641 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21642 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 21701 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21702 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 21761 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||| | |||| Sbjct 21762 CAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 21797 >seq922 Length=56487 Score = 459 bits (508), Expect = 9e-127 Identities = 461/561 (82%), Gaps = 42/561 (7%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTC-TCCATG-AGTCCCCCTTAGGACACC-TGCGTTAT 65 |||| || ||| ||||||||||||| || || || | ||||||||||| | ||||| Sbjct 42358 TTTGTTC-ACACGAGATTTCTGTTCCTCGTTGCAGCTCATCTTAGGACACCGTTGGTTAT 42416 Query 66 GGTTT-AACAGATGTG-CCGCCCCAGCCAAA-CTCCCCACCTGACAATGTCATCAACCCG 122 ||| |||||||||| |||||||||||||| ||||||||||||||| ||| || |||| Sbjct 42417 CCTTTTAACAGATGTGGCCGCCCCAGCCAAAACTCCCCACCTGACAAGGTCCTCCGCCCG 42476 Query 123 GATCGGCCCGCGAAG-GA-CCTTAA-CGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCT 179 ||||| || ||| || |||| | ||| || | | | || | | | | | | Sbjct 42477 GATCGACCGCATAAGCGAGCCTTGGGCACCAAAAGAAGAGGGTTGTACCCGCCTCCAGAT 42536 Query 180 T-CATTGA--TTAAGTaaaaaaaCGATAAGGGT-AGTGGTATTTCACTTGCGCCGAAACG 235 | || || | |||||||| |||| ||| || | |||||||||| |||||||||| Sbjct 42537 TTCACCGAGCTAAAGTAAAATAACGTTAAAAGTTACTGGTATTTCA-TTGCGCCGAA--- 42592 Query 236 GCTCCCACTTATTC-TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42593 GCTCCCACTTAATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 42652 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG-TTTCGC 353 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 42653 AACAGGGTCTTCTTT-CCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTTCGC 42711 Query 354 TAGATAGTAGATAGGGACAGT-GGGAATCT-CGTTAATCCATTCATGCGCGTC-ACTAAT 410 | |||| || ||||||||| |||||||| |||||||||||||||||||||| |||||| Sbjct 42712 T-GATAAGTGACAGGGACAGTCGGGAATCTCCGTTAATCCATTCATGCGCGTCAACTAAT 42770 Query 411 -TAGA-TGACGA-GGCATTTGGCTACCTTAAGAGAGTCAT-AGTTAC-TCCCG------C 459 |||| |||||| ||||||||||||||||||||||||||| | ||| ||||| | Sbjct 42771 GTAGATTGACGAGGGCATTTGGCTACCTTAAGAGAGTCATGACGTACGTCCCGGCTCGTC 42830 Query 460 CG----TTTACCCGCGC-TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 || ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 42831 CGTTTTTTTACCCGCGCATTGGTTGAATTTCTTCAC-TTGACATTCAGAGCACTGGGCAG 42889 Query 515 AAATCACATTGCGTCAACATC 535 |||||||||||||| | |||| Sbjct 42890 AAATCACATTGCGTTAGCATC 42910 >seq1353 Length=54760 Score = 334 bits (370), Expect = 2e-89 Identities = 301/354 (85%), Gaps = 32/354 (9%) Strand=Plus/Plus Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 ||| |||| ||| ||||||||| ||||||||||| ||| |||||||||||| ||||| Sbjct 4645 AAATAACGTTAAAAGTAGTGGTAATTCACTTGCGC-GAA---GCTCCCACTTATCCTACA 4700 Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA---GCTCAACAGGGTCTTCTTTC 310 ||||||| ||||||||||||||||||||||||||| | |||||| ||||||||||| Sbjct 4701 CCTCTCA-GTCATTTCACAAAGTCGGACTAGAGTCCACAGGCTCAAGCAGGTCTTCTTTC 4759 Query 311 CCCGCTGATTCCGCCAAGCC-CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 || |||||||| |||||||| |||||||||||||||||||||||| ||||||||| |||| Sbjct 4760 CC-GCTGATTCTGCCAAGCCGCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGG 4818 Query 370 -ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT--AGATGACG---AGGC 423 |||||||| | || ||||||||||||| |||||||||||| |||| || ||| Sbjct 4819 AACAGTGGGGA-ATCCTTAATCCATTCAT--GCGTCACTAATTGAGGATGCCGGGAGGGC 4875 Query 424 ATTTGG-CTACCTT-AAGAGAGTCA---TAG-TTACTCCCGCCGTT-TA-CCCGCGC-TT 474 |||||| ||||||| ||||| |||| || |||||||||||||| || ||||||| || Sbjct 4876 ATTTGGACTACCTTGAAGAGGGTCACTTCAGTTTACTCCCGCCGTTGTACCCCGCGCGTT 4935 Query 475 GGTT-GAATTTCTTCACT-TTGACA--TTCAGAGCACTGGGCAGAAATCACATT 524 |||| ||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 4936 GGTTGGAATTTCTTCACTGTTGACAGGTTCAGAGCACTGGGCAGAAATCACATT 4989 >seq7220 Length=3188 Score = 188 bits (208), Expect = 2e-45 Identities = 196/246 (80%), Gaps = 12/246 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| |||||| |||||||| || || | |||||||||||||||||| Sbjct 265 CTTTTGTTCCACACGAGATT-CTGTTCTCGTTGGCTCATC-TTAGGACACCTGCGTTATC 322 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 323 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 382 Query 127 GGCCCGC-GAAG-GA-CCTTAACG-CCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCA 182 | ||||| ||| || |||| | ||| || | || | || | || |||| |||| Sbjct 383 GACCCGCATAAGCGAGCCTTTGGGACCAAAAGAAGG--GTTGTACCCCGCCTCCGATTCA 440 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTA-GTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || ||||||||| |||| ||| ||| |||||||||||||||||||||| ||||| Sbjct 441 CGGAGTAAGTAAAATAACGTTAAAAGTATGTGGTATTTCACTTGCGCCGAA---GCTCCA 497 Query 242 ACTTAT 247 |||||| Sbjct 498 ACTTAT 503 >seq24 Length=220514 Score = 129 bits (142), Expect = 2e-27 Identities = 93/107 (87%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||| |||| || ||||||||| |||| ||| ||||||||||||||||||||||||| Sbjct 147048 TCCGATTCACGGAGTAAGTAAAATAACGCTAAAAGTAGTGGTATTTCACTTGCGCCGAA- 147106 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280 ||| |||||||| ||||||||||||||||||||||||||| |||| Sbjct 147107 --GCTTCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGCCGGA 147151 >seq2039 Length=24490 Score = 120 bits (132), Expect = 1e-24 Identities = 147/185 (79%), Gaps = 23/185 (12%) Strand=Plus/Minus Query 217 TTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTC-TCAAGTCATTT--CACAA 273 || ||||||||||||| | ||||| | || || || | |||||||||| ||||| Sbjct 13711 TTCCACTTGCGCCGAATC---TCCCATTAATCCTCAACTGCGTCAAGTCATTGGGCACAA 13655 Query 274 ---AGTCGGACTAGAGTCAAG-CTCAAC-AGGGT---CTTCTTTCCCCGCTGATTCCGCC 325 |||||||||||||||||| |||||| ||||| ||||||||| |||| ||| ||| Sbjct 13654 CCGAGTCGGACTAGAGTCAAGGCTCAACGAGGGTGCGCTTCTTTCC--GCTGGTTCTGCC 13597 Query 326 AAGC-CCGTTCCC-TTGGCTG--TGGTTTCG-CTAGATAGT-AGAT-AGGGACAGTGGGA 378 ||| |||||||| ||||||| |||||||| || |||||| ||| ||||||||||||| Sbjct 13596 AAGGGCCGTTCCCGTTGGCTGCGTGGTTTCGGCTGGATAGTTAGACCAGGGACAGTGGGA 13537 Query 379 ATCTC 383 ||||| Sbjct 13536 ATCTC 13532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635072290880