Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq285 545 8e-153
seq922 459 9e-127
seq1353 334 2e-89
seq7220 188 2e-45
seq24 129 2e-27
seq2039 120 1e-24
>seq285
Length=93944
Score = 545 bits (604), Expect = 8e-153
Identities = 323/336 (96%), Gaps = 3/336 (1%)
Strand=Plus/Plus
Query 200 CGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTC 259
|| ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 21465 CGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCACTTATCCTACACCTCTC 21521
Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21522 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 21581
Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379
|| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 21582 TCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAAGGACAGTGGGAA 21641
Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21642 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 21701
Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21702 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 21761
Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||| | ||||
Sbjct 21762 CAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 21797
>seq922
Length=56487
Score = 459 bits (508), Expect = 9e-127
Identities = 461/561 (82%), Gaps = 42/561 (7%)
Strand=Plus/Plus
Query 9 TTTGCTCTACAGGAGATTTCTGTTC-TCCATG-AGTCCCCCTTAGGACACC-TGCGTTAT 65
|||| || ||| ||||||||||||| || || || | ||||||||||| | |||||
Sbjct 42358 TTTGTTC-ACACGAGATTTCTGTTCCTCGTTGCAGCTCATCTTAGGACACCGTTGGTTAT 42416
Query 66 GGTTT-AACAGATGTG-CCGCCCCAGCCAAA-CTCCCCACCTGACAATGTCATCAACCCG 122
||| |||||||||| |||||||||||||| ||||||||||||||| ||| || ||||
Sbjct 42417 CCTTTTAACAGATGTGGCCGCCCCAGCCAAAACTCCCCACCTGACAAGGTCCTCCGCCCG 42476
Query 123 GATCGGCCCGCGAAG-GA-CCTTAA-CGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCT 179
||||| || ||| || |||| | ||| || | | | || | | | | | |
Sbjct 42477 GATCGACCGCATAAGCGAGCCTTGGGCACCAAAAGAAGAGGGTTGTACCCGCCTCCAGAT 42536
Query 180 T-CATTGA--TTAAGTaaaaaaaCGATAAGGGT-AGTGGTATTTCACTTGCGCCGAAACG 235
| || || | |||||||| |||| ||| || | |||||||||| ||||||||||
Sbjct 42537 TTCACCGAGCTAAAGTAAAATAACGTTAAAAGTTACTGGTATTTCA-TTGCGCCGAA--- 42592
Query 236 GCTCCCACTTATTC-TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42593 GCTCCCACTTAATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 42652
Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG-TTTCGC 353
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 42653 AACAGGGTCTTCTTT-CCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTTCGC 42711
Query 354 TAGATAGTAGATAGGGACAGT-GGGAATCT-CGTTAATCCATTCATGCGCGTC-ACTAAT 410
| |||| || ||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct 42712 T-GATAAGTGACAGGGACAGTCGGGAATCTCCGTTAATCCATTCATGCGCGTCAACTAAT 42770
Query 411 -TAGA-TGACGA-GGCATTTGGCTACCTTAAGAGAGTCAT-AGTTAC-TCCCG------C 459
|||| |||||| ||||||||||||||||||||||||||| | ||| ||||| |
Sbjct 42771 GTAGATTGACGAGGGCATTTGGCTACCTTAAGAGAGTCATGACGTACGTCCCGGCTCGTC 42830
Query 460 CG----TTTACCCGCGC-TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514
|| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 42831 CGTTTTTTTACCCGCGCATTGGTTGAATTTCTTCAC-TTGACATTCAGAGCACTGGGCAG 42889
Query 515 AAATCACATTGCGTCAACATC 535
|||||||||||||| | ||||
Sbjct 42890 AAATCACATTGCGTTAGCATC 42910
>seq1353
Length=54760
Score = 334 bits (370), Expect = 2e-89
Identities = 301/354 (85%), Gaps = 32/354 (9%)
Strand=Plus/Plus
Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253
||| |||| ||| ||||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct 4645 AAATAACGTTAAAAGTAGTGGTAATTCACTTGCGC-GAA---GCTCCCACTTATCCTACA 4700
Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA---GCTCAACAGGGTCTTCTTTC 310
||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 4701 CCTCTCA-GTCATTTCACAAAGTCGGACTAGAGTCCACAGGCTCAAGCAGGTCTTCTTTC 4759
Query 311 CCCGCTGATTCCGCCAAGCC-CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369
|| |||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 4760 CC-GCTGATTCTGCCAAGCCGCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGG 4818
Query 370 -ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT--AGATGACG---AGGC 423
|||||||| | || ||||||||||||| |||||||||||| |||| || |||
Sbjct 4819 AACAGTGGGGA-ATCCTTAATCCATTCAT--GCGTCACTAATTGAGGATGCCGGGAGGGC 4875
Query 424 ATTTGG-CTACCTT-AAGAGAGTCA---TAG-TTACTCCCGCCGTT-TA-CCCGCGC-TT 474
|||||| ||||||| ||||| |||| || |||||||||||||| || ||||||| ||
Sbjct 4876 ATTTGGACTACCTTGAAGAGGGTCACTTCAGTTTACTCCCGCCGTTGTACCCCGCGCGTT 4935
Query 475 GGTT-GAATTTCTTCACT-TTGACA--TTCAGAGCACTGGGCAGAAATCACATT 524
|||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 4936 GGTTGGAATTTCTTCACTGTTGACAGGTTCAGAGCACTGGGCAGAAATCACATT 4989
>seq7220
Length=3188
Score = 188 bits (208), Expect = 2e-45
Identities = 196/246 (80%), Gaps = 12/246 (5%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| |||||| |||||||| || || | ||||||||||||||||||
Sbjct 265 CTTTTGTTCCACACGAGATT-CTGTTCTCGTTGGCTCATC-TTAGGACACCTGCGTTATC 322
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 323 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 382
Query 127 GGCCCGC-GAAG-GA-CCTTAACG-CCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCA 182
| ||||| ||| || |||| | ||| || | || | || | || |||| ||||
Sbjct 383 GACCCGCATAAGCGAGCCTTTGGGACCAAAAGAAGG--GTTGTACCCCGCCTCCGATTCA 440
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTA-GTGGTATTTCACTTGCGCCGAAACGGCTCCC 241
|| ||||||||| |||| ||| ||| |||||||||||||||||||||| |||||
Sbjct 441 CGGAGTAAGTAAAATAACGTTAAAAGTATGTGGTATTTCACTTGCGCCGAA---GCTCCA 497
Query 242 ACTTAT 247
||||||
Sbjct 498 ACTTAT 503
>seq24
Length=220514
Score = 129 bits (142), Expect = 2e-27
Identities = 93/107 (87%), Gaps = 3/107 (3%)
Strand=Plus/Plus
Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233
|||| |||| || ||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 147048 TCCGATTCACGGAGTAAGTAAAATAACGCTAAAAGTAGTGGTATTTCACTTGCGCCGAA- 147106
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280
||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 147107 --GCTTCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGCCGGA 147151
>seq2039
Length=24490
Score = 120 bits (132), Expect = 1e-24
Identities = 147/185 (79%), Gaps = 23/185 (12%)
Strand=Plus/Minus
Query 217 TTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTC-TCAAGTCATTT--CACAA 273
|| ||||||||||||| | ||||| | || || || | |||||||||| |||||
Sbjct 13711 TTCCACTTGCGCCGAATC---TCCCATTAATCCTCAACTGCGTCAAGTCATTGGGCACAA 13655
Query 274 ---AGTCGGACTAGAGTCAAG-CTCAAC-AGGGT---CTTCTTTCCCCGCTGATTCCGCC 325
|||||||||||||||||| |||||| ||||| ||||||||| |||| ||| |||
Sbjct 13654 CCGAGTCGGACTAGAGTCAAGGCTCAACGAGGGTGCGCTTCTTTCC--GCTGGTTCTGCC 13597
Query 326 AAGC-CCGTTCCC-TTGGCTG--TGGTTTCG-CTAGATAGT-AGAT-AGGGACAGTGGGA 378
||| |||||||| ||||||| |||||||| || |||||| ||| |||||||||||||
Sbjct 13596 AAGGGCCGTTCCCGTTGGCTGCGTGGTTTCGGCTGGATAGTTAGACCAGGGACAGTGGGA 13537
Query 379 ATCTC 383
|||||
Sbjct 13536 ATCTC 13532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635072290880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |