Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq105 279 2e-72 seq3991 80.6 8e-13 >seq105 Length=221364 Score = 279 bits (308), Expect = 2e-72 Identities = 233/270 (86%), Gaps = 14/270 (5%) Strand=Plus/Minus Query 9 TCCAAT-TACAAGACCCAAAAGAGCCCTGTATCAGT-ATTTA-TTGTCACTACCTCCCCG 65 |||||| ||| |||| | |||||||| |||| || ||||| ||||||||||||||||| Sbjct 6118 TCCAATCTACCAGACTCGTAAGAGCCCGGTATTTGTTATTTAGTTGTCACTACCTCCCCG 6059 Query 66 TGTCGGGATTGGGTA-ATTTGCGCGCCTGCTGCCTTCCTTGGATGT-GGTAGCCGTTTCT 123 ||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| | Sbjct 6058 -GTCAGGATTGGGTAGATTTGCGCGCCTGCTGCCTTCCTTGGATGTTGGTAGCCGTTTAT 6000 Query 124 C---AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT-GGT 179 | |||||||||||||||||||||||| || ||| |||| ||||||| ||||| ||| Sbjct 5999 CCCCAGGCTCCCTCTCCGGAATCGAACC-TACTTCTCCGTCACCCGTTACCACCATTGGT 5941 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA-TTTGAATGAACCATCGCC-G 237 ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 5940 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTTGAATGATGCGTCGCCAA 5881 Query 238 GCTC-AAGGCCATGCGATTCGTTAAGTTAT 266 || | ||||||||||||| ||| |||||| Sbjct 5880 GCACAAAGGCCATGCGATCCGTCGAGTTAT 5851 >seq3991 Length=23412 Score = 80.6 bits (88), Expect = 8e-13 Identities = 141/197 (72%), Gaps = 25/197 (13%) Strand=Plus/Plus Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAA 261 || |||||||||||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 18531 AGGTGATAGGGCAGAAATTGAAATGACTGCGCGCCAGCACAAGGCCATGCGATCCGTCGA 18590 Query 262 GTTATTATGAATCACCAAGGAGCCCCGA---AG----GGCGTTG--GTTTTTTATCTAAT 312 ||||| |||||||| || |||| ||| || |||| | |||||||||||| Sbjct 18591 GTTATCATGAATCATCA--GAGCAACGAGTCAGAGCTCGCGTCGACCTTTTTTATCTAAA 18648 Query 313 AAAT---ACACCCCTT---CCGAAGTCGGGGTTTTTAGCA-TGTATTAG----CTC-TAG 360 ||| | ||| ||| | |||||| |||||| | ||| ||||||| || ||| Sbjct 18649 TAATGCAATACCGCTTATCCAGAAGTCAGGGTTTGTTGCACGGTATTAGAGACATCTTAG 18708 Query 361 AATTAC--CACGGTTAT 375 |||||| |||||||| Sbjct 18709 AATTACTTAACGGTTAT 18725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510282037760