Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq105 279 2e-72
seq3991 80.6 8e-13
>seq105
Length=221364
Score = 279 bits (308), Expect = 2e-72
Identities = 233/270 (86%), Gaps = 14/270 (5%)
Strand=Plus/Minus
Query 9 TCCAAT-TACAAGACCCAAAAGAGCCCTGTATCAGT-ATTTA-TTGTCACTACCTCCCCG 65
|||||| ||| |||| | |||||||| |||| || ||||| |||||||||||||||||
Sbjct 6118 TCCAATCTACCAGACTCGTAAGAGCCCGGTATTTGTTATTTAGTTGTCACTACCTCCCCG 6059
Query 66 TGTCGGGATTGGGTA-ATTTGCGCGCCTGCTGCCTTCCTTGGATGT-GGTAGCCGTTTCT 123
||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 6058 -GTCAGGATTGGGTAGATTTGCGCGCCTGCTGCCTTCCTTGGATGTTGGTAGCCGTTTAT 6000
Query 124 C---AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT-GGT 179
| |||||||||||||||||||||||| || ||| |||| ||||||| ||||| |||
Sbjct 5999 CCCCAGGCTCCCTCTCCGGAATCGAACC-TACTTCTCCGTCACCCGTTACCACCATTGGT 5941
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA-TTTGAATGAACCATCGCC-G 237
||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 5940 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTTGAATGATGCGTCGCCAA 5881
Query 238 GCTC-AAGGCCATGCGATTCGTTAAGTTAT 266
|| | ||||||||||||| ||| ||||||
Sbjct 5880 GCACAAAGGCCATGCGATCCGTCGAGTTAT 5851
>seq3991
Length=23412
Score = 80.6 bits (88), Expect = 8e-13
Identities = 141/197 (72%), Gaps = 25/197 (13%)
Strand=Plus/Plus
Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAA 261
|| |||||||||||||||| ||||| |||| || |||||||||||||| ||| |
Sbjct 18531 AGGTGATAGGGCAGAAATTGAAATGACTGCGCGCCAGCACAAGGCCATGCGATCCGTCGA 18590
Query 262 GTTATTATGAATCACCAAGGAGCCCCGA---AG----GGCGTTG--GTTTTTTATCTAAT 312
||||| |||||||| || |||| ||| || |||| | ||||||||||||
Sbjct 18591 GTTATCATGAATCATCA--GAGCAACGAGTCAGAGCTCGCGTCGACCTTTTTTATCTAAA 18648
Query 313 AAAT---ACACCCCTT---CCGAAGTCGGGGTTTTTAGCA-TGTATTAG----CTC-TAG 360
||| | ||| ||| | |||||| |||||| | ||| ||||||| || |||
Sbjct 18649 TAATGCAATACCGCTTATCCAGAAGTCAGGGTTTGTTGCACGGTATTAGAGACATCTTAG 18708
Query 361 AATTAC--CACGGTTAT 375
|||||| ||||||||
Sbjct 18709 AATTACTTAACGGTTAT 18725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510282037760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |